CX043727

Overview
NameCX043727
Unique NameCX043727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7218 contig Csv1_Contig7218:291..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 66/130 (50.77%), Postives = 75/130 (57.69%), Query Frame = -1
Query:  308 FTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 697
            F KRSQSFIDRG   + A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD    G              +   + EQEQMVA
Sbjct:  492 FAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601          
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 68/167 (40.72%), Postives = 85/167 (50.90%), Query Frame = -1
Query:  311 SSPVRKPXXXXXXXXXXXXXXXXXXXXXAFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 784
            SSPVR+P                     AF KRS SF                  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W EQMYI+ EQ +
Sbjct:  450 SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20
Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = -1
Query:  311 TSRAGLSMVSNPPTMRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 655
            T+ A  S+   P T  +  SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  E+ +   W EQMY E+EQ V
Sbjct:  469 TAFAKRSLSFKPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579          
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 55/128 (42.97%), Postives = 73/128 (57.03%), Query Frame = -1
Query:  308 KRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 691
            +RSQSFI+R       GL+      +M ++ L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+  P+       E +    WMEQ Y+E EQ VA
Sbjct:  498 QRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607          
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  386 TKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 694
            T RS S  D G   +RA   +V +P    SS+ S W SP G  DWGV G+EL KL++S+SF  RS                  D+PD+SWV++LVK+  PE Q
Sbjct:  623 TMRSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705          
The following BLAST results are available for this feature:
BLAST of CX043727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H33_ORYSJ3.700e-2250.77Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H29_ARATH3.700e-2240.72Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH2.030e-2047.46Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH7.985e-1742.97Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ2.939e-1141.75Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13A10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A10-B19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043727 ID=CX043727; Name=CX043727; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTTTAGCATTGAAACAAATAGTATTATATTTTGTAGA
TTACAGTGGGAATCATCAAAAGATTACACAATGTAGGGAAAGGGCTTTAG
ACCTCTTTCCATGTAAGAGTGTAAAAACAATTAACAAATCTTTCTTTAAG
CTAAACTATTAATGATATGAGCAGGGCCTCATTTATGCTCACTATATTCT
CTCTTTTTTAGCTCCTACAACTTTAGCTACAAACGTGGAATCTAAGAAGA
ATTCAAAGAATATGAATTTGGTCAAAATAAGGTAGGAGCACATAGCTGTT
TTCATTATGCCACCATCTGCTCCTGTTCTATGTACATTTGCTCCATCCAT
GGATTGTATTGCTGCTTCTCTGCACCAAACAATCCCTGTCCTTCTGGCGT
AACATCTTTCACCAAGGAATTAACCCAGGACACATCTGGCTCATCAACAT
TCGATGATGATGGAGTGAAGCCTTTTGTTGTTGGGGTTGTTATATTGTTG
CTACGAAACCCGAATGAAGCTGACTTCTTAAGTTTGTTCAGCTCATCTCC
TTGAACTCCCCAATCCAGTTTCCCATCAGGGGAGCTCCAATCTGATAGAT
TAGAGGATCTCATAGTCGGAGGGTTAGAAACCATGCTGAGACCAGCACGA
CTGGTCACTGCTCCACGATCAATAAAACTCTGGCTTCGCTTTGTAAAGGC
AGAAGACCTTGAATTCATCACTGCAGCTGCCACTGCAGCCGAAGAATCAA
ACCCAAATGATGAAGGTTTTCTCACTGGAGAGGATGAGAGGTTGGCAGCT
GGATAGCTTGCACGAAGTTGGTTCAT
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