CX043727
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22 Identity = 66/130 (50.77%), Postives = 75/130 (57.69%), Query Frame = -1 Query: 308 FTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 697 F KRSQSFIDRG + A S++S T S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR + T + EPDVSWVNSLVKD G + + EQEQMVA Sbjct: 492 FAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22 Identity = 68/167 (40.72%), Postives = 85/167 (50.90%), Query Frame = -1 Query: 311 SSPVRKPXXXXXXXXXXXXXXXXXXXXXAFTKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 784 SSPVR+P AF KRS SF P +SN+SDW SP+GKL+WG+Q DELNKL++SASFG NN + + P+ DEPDVSWVNSLVK+ PE G + GA +K + W EQMYI+ EQ + Sbjct: 450 SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20 Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = -1 Query: 311 TSRAGLSMVSNPPTMRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 655 T+ A S+ P T + SNLSDW SP+GKL+WG++G+ELNK+++S SFG NN + DEPDVSWVNSLVKD T + FG E+ + W EQMY E+EQ V Sbjct: 469 TAFAKRSLSFKPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17 Identity = 55/128 (42.97%), Postives = 73/128 (57.03%), Query Frame = -1 Query: 308 KRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 691 +RSQSFI+R GL+ +M ++ L+DW S DGKLDW VQGDEL KL+KS SF R+ + + + ++EPDVSWV LVK+ P+ E + WMEQ Y+E EQ VA Sbjct: 498 QRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607
BLAST of CX043727 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11 Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = -1 Query: 386 TKRSQSFIDRGAVTSRAGLSMVSNPPTMRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 694 T RS S D G +RA +V +P SS+ S W SP G DWGV G+EL KL++S+SF RS D+PD+SWV++LVK+ PE Q Sbjct: 623 TMRSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705 The following BLAST results are available for this feature:
BLAST of CX043727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043727 ID=CX043727; Name=CX043727; organism=Citrus sinensis; type=EST; length=826bpback to top |