CX043724

Overview
NameCX043724
Unique NameCX043724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.139e-56
Identity = 110/145 (75.86%), Postives = 118/145 (81.38%), Query Frame = -3
Query:  254 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 688
            RQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+TGT+MRRKMWLQNM                  LSVCHGF C
Sbjct:   75 RQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 8.017e-56
Identity = 110/147 (74.83%), Postives = 118/147 (80.27%), Query Frame = -3
Query:  248 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCGK 688
            RQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GT+MRRKMW QNM                  LS+C GFNCGK
Sbjct:   75 RQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNCGK 221          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 7.504e-54
Identity = 107/155 (69.03%), Postives = 121/155 (78.06%), Query Frame = -3
Query:  254 HALLVMEEL-RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 715
            + ++V+E   RQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG KLKE MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTKM+RK+W +NM                  LSVCHGF C
Sbjct:   65 YCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.297e-53
Identity = 105/145 (72.41%), Postives = 114/145 (78.62%), Query Frame = -3
Query:  254 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 688
            RQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG KLKE MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL  QAQDFR+ GTK+RRKMW +NM                  LSVC GF C
Sbjct:  140 RQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.048e-43
Identity = 89/173 (51.45%), Postives = 114/173 (65.90%), Query Frame = -3
Query:  254 HHVFALVAVDAEKFKQWMHALLVMEEL-RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 769
            HH F  +  D      + + ++  + L +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFGP +KE M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKTENL  QAQ+++  GT++RRK+W QNM                  +SVCHGFNC
Sbjct:   53 HHTFNFLVEDG-----YAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.865e-37
Identity = 85/147 (57.82%), Postives = 96/147 (65.31%), Query Frame = -3
Query:  248 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCGK 688
            R+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG  LKE MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L     +   Q Q F    T+M+RK W QNM                  LSVC GFNCGK
Sbjct:   75 REIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK 217          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.057e-34
Identity = 77/164 (46.95%), Postives = 98/164 (59.76%), Query Frame = -3
Query:  254 RQIPMAFLERVKDEFVSKYGGGKAAT-------------------APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 688
            R +P  FLERVK++F  +Y                          + A  L++EFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKTENL  QA  F+  G ++RRKMWLQ++                  +  C GF C
Sbjct:   75 RSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.595e-19
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = -3
Query:  263 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 688
            R IP AFL+ +   FV  YG     +A A  +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN+      FR    + R  MW +N+                    VCHG
Sbjct:   74 RNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.001e-19
Identity = 45/117 (38.46%), Postives = 75/117 (64.10%), Query Frame = -3
Query:  338 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 688
            R++P ++LE +   F+  YG   A  APA  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  +   +  FR    ++RR +W++N
Sbjct:   74 RRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of CX043724 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.746e-18
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = -3
Query:  263 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 688
            R+IP AFLE +   FV  YG     TA A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N+      FR    + R  +W +N                     +CHG
Sbjct:   73 RRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
The following BLAST results are available for this feature:
BLAST of CX043724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA721_ARATH6.139e-5675.86Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH8.017e-5674.83Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH7.504e-5469.03Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH8.297e-5372.41Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH2.048e-4351.45Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH2.865e-3757.82Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH5.057e-3446.95Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA713_ARATH4.595e-1936.62Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH6.001e-1938.46Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA711_ARATH1.746e-1835.92Vesicle-associated membrane protein 711 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_13A08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A08-B15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043724 ID=CX043724; Name=CX043724; organism=Citrus sinensis; type=EST; length=789bp
ATTTTAGTTATGGCCGGTATAATCAGCAGCAGCATCTTTGCACAAGCATT
CTCACAATATAATGACGGGACTCATTCACAAGCAAAAATAAGTTTTCGGT
TTTCTTTGTAACAAATATAGGGAAACTGCTAACTTTTTTAGACTAAATAC
AAAGTCAAGATCATATATATTTATATATCTCTTTCACAATATCATCACAG
AAGCTCTTAGAAGAGCGTAATATAAGCCTCCTGGAGAATAGCACTCATTT
TCCGCAGTTGAAACCATGGCAAACAGAGAGGACTATGATGAGGATCAAGG
CAATCAGTATTCCCAAAACAATCAGCTTGATCTTCATATTTTGCAGCCAC
ATTTTCCTCCGCATTTTGGTCCCCGTACTCCGAAAGTCTTGTGCCTGCTG
ATGAAGGTTCTCAGTCTTATCGACCAGTAGCTCAATCTTTTCCCCCCTAT
CTAAAACCTTTTCAATATTCTCCATCATAACACCTTTGACTTCTGAAACC
TGAGCCTTAACCTTCGCAAGCTTGCTGATCTCCTCAGGATGATCAACACA
GTACTGCATAAGTTCTTTCAATTTTGGTCCAAATTCCTTGTTCAGGCCAT
TGGCAGGAGCCGTGGCAGCCTTTCCACCCCCATATTTGGAAACAAATTCA
TCCTTGACGCGCTCCAGAAAAGCCATCGGTATTTGGCGAAGCTCTTCCAT
GACAAGGAGAGCATGCATCCACTGCTTGAATTTCTCCGCGTCCACTGCCA
CAAGGGCAAAAACATGATGCTGAATGACAGATTTCAGAA
back to top