DC900339

Overview
NameDC900339
Unique NameDC900339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:160..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.348e-77
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          

HSP 2 Score: 143.665 bits (361), Expect = 9.348e-77
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGP+DSP+AGGVFLVSIHFPPDYPFKPPKVAFR   F P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.828e-76
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct:   71 TKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          

HSP 2 Score: 142.51 bits (358), Expect = 7.828e-76
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPSDSP++GGVFLV+IHFPPDYPFKPPKVAFR   F P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.549e-75
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TARSWTQKYAMG
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          

HSP 2 Score: 142.124 bits (357), Expect = 8.549e-75
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPS+SP+AGGVFLV+IHFPPDYPFKPPKVAFR   F P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.115e-74
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE TAR+WTQKYAMG
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          

HSP 2 Score: 139.813 bits (351), Expect = 1.115e-74
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGP++SP++GGVFLV+IHFPPDYPFKPPKVAFR   F P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.454e-74
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TAR+WTQKYAMG
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          

HSP 2 Score: 142.51 bits (358), Expect = 1.454e-74
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            MASKRI KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPSDSP++GGVFLV+IHFPPDYPFKPPKVAFR   F P
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 9.335e-74
Identity = 75/78 (96.15%), Postives = 78/78 (100.00%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Sbjct:   71 TKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          

HSP 2 Score: 137.502 bits (345), Expect = 9.335e-74
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            MASKRI KELKDLQKDPP++CSAGPVA+DMFHWQATIMGP +SP+AGGVFLVSIHFPPDYPFKPPKV+F+
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFK 70          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.522e-73
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 498
            TKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKYAMG
Sbjct:   71 TKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          

HSP 2 Score: 139.428 bits (350), Expect = 3.522e-73
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFR 263
            MASKRINKEL+DLQ+DPP SCSAGP  DDMF WQATIMGP+DSPFAGGVFLV+IHFPPDYPFKPPKVAFR
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFR 70          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.885e-68
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            TKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTD+ KYE  ARSWTQKYA+
Sbjct:   71 TKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          

HSP 2 Score: 130.183 bits (326), Expect = 1.885e-68
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRY*GFPP 281
            MA++RI KELK+LQ+DPP SCSAGP  +DMFHWQATIMGP++SP++GGVFLV+IHFPPDYPFKPPKV FR   F P
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHP 76          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.484e-66
Identity = 64/77 (83.12%), Postives = 75/77 (97.40%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR++YE +AR WT+KYA+
Sbjct:   71 TRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          

HSP 2 Score: 127.102 bits (318), Expect = 6.484e-66
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            MA KRIN+EL DL KDPP+SCSAGPV DD+FHWQATIMGP+DSP+AGGVF +SIHFP DYPFKPPKV F
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNF 69          
BLAST of DC900339 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.188e-65
Identity = 64/77 (83.12%), Postives = 75/77 (97.40%), Query Frame = 1
Query:  265 TKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 495
            T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDPLVPEIAH+YKT RA+YE+TAR WT+KYA+
Sbjct:   71 TRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          

HSP 2 Score: 125.561 bits (314), Expect = 3.188e-65
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   54 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF 260
            MA KRINKEL DL +DPP+SCSAGPV +D+FHWQATIMGPSDSP+AGGVF ++IHFP DYPFKPPKV F
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNF 69          
The following BLAST results are available for this feature:
BLAST of DC900339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC4_SOLLC9.348e-77100.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH7.828e-7697.44Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH8.549e-7596.15Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH1.115e-7497.44Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC9_ARATH1.454e-7494.87SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH9.335e-7496.15Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH3.522e-7392.31Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH1.885e-6889.61Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO6.484e-6683.12Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_MAGGR3.188e-6583.12Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionDC900339 VSS Citrus sinensis cDNA clone VS28690 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900339 ID=DC900339; Name=DC900339; organism=Citrus sinensis; type=EST; length=689bp
AATAACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATTCC
CAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAGGA
CCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCATT
GGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTGTA
TTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCGAA
GGTGGCCTTCCGTTACTAAGGTTTTCCACCCTAACATCAACAGCAATGGT
AGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAAT
ATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCAG
ATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGCC
AAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTTA
AGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCTA
TTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATTT
GGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCAA
TTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTG
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