DC900336

Overview
NameDC900336
Unique NameDC900336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 1.297e-101
Identity = 181/195 (92.82%), Postives = 189/195 (96.92%), Query Frame = -1
Query:    3 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQ 587
            YDRHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDSVCVVTQKKVPDKLLDQT V+HLFPITKYLGLLATG TADAR+LV QARNEAAE+RFK+GYEMPVDVLS+WIADKSQVYTQHAYMRPLGVVAM+LGIDEEKGPQL+KCDPAGHFFGHKATSAG KEQEAINFLEKKMKNDPAFSYEETVQTA+SALQ
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQ 203          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 6.663e-98
Identity = 173/195 (88.72%), Postives = 186/195 (95.38%), Query Frame = -1
Query:    3 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQ 587
            Y+RHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDS+CVVT KKVPDKLLD T VTHLFPITKYLGLLATG TADAR+LV QARNEAAE+RF +GYEMPVDVL++WIADKSQVYTQHAYMRPLGVVAMVLGID+E GPQLYKCDPAGH+FGHKATSAGLK+QEAINFLEKKMKNDP+F+YEETVQTA+SALQ
Sbjct:    9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQ 203          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 4.319e-97
Identity = 169/195 (86.67%), Postives = 187/195 (95.90%), Query Frame = -1
Query:    3 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQ 587
            YDRHITIFSPEGRLFQVEYAFKAVKA  ITSIGVRGKDSVCVVTQKKVPDKLLDQ+ V+HLFP+TKYLGLLATG TAD+RSLV QARNEAAE+RF++GYEMP D+L++WIADKSQVYTQHAYMRPLGVVAMVLGIDEE+GP LYKCDPAGHF+GHKATSAG+KEQEA+NFLEKKMK +PAF+Y+ETVQTA+SALQ
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQ 203          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 9.621e-97
Identity = 172/195 (88.21%), Postives = 185/195 (94.87%), Query Frame = -1
Query:    3 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQ 587
            YDRHITIFSPEGRL+QVEYAFKAVK+  +TSIGVRGKDSVCVVTQKKVPDKLLD T VTHLFPITKY+GLLATG TADARSLV+QARNEAAE+RFK+GYEMPVDVL++WIADK+QVYTQHAYMRPLGVVAMVLG DEEK  QL+KCDPAGHFFGHKATSAGLKEQEAINFLEKKMK+DP FSYEETVQ A+SALQ
Sbjct:    9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQ 203          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 348.977 bits (894), Expect = 2.370e-95
Identity = 165/195 (84.62%), Postives = 185/195 (94.87%), Query Frame = -1
Query:    3 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQ 587
            YDRHITIFSPEGRLFQVEYAFKAVK   ITSIGVRGKDSVCVVTQKKVPDKLLDQ+ VTHLFPITKY+GL+ATG TADARSLV QARN+AAE+RF +GYEMPVD+L++WIADKSQVYTQHAYMRPLGVVAMV+G+DEE GP LYKCDPAGHF+GHKATSAG+KEQEA+NFLEKKMK +P+F+++ETVQTA+SALQ
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQ 203          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.725e-66
Identity = 119/194 (61.34%), Postives = 159/194 (81.96%), Query Frame = -1
Query:    6 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSAL 587
            +DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.725e-66
Identity = 119/194 (61.34%), Postives = 159/194 (81.96%), Query Frame = -1
Query:    6 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSAL 587
            +DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.725e-66
Identity = 119/194 (61.34%), Postives = 159/194 (81.96%), Query Frame = -1
Query:    6 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSAL 587
            +DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.725e-66
Identity = 119/194 (61.34%), Postives = 159/194 (81.96%), Query Frame = -1
Query:    6 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSAL 587
            +DRHITIFSPEGRL+QVEYAFKA+    +TS+ VRGKD   +VTQKKVPDKLLD + VTHLF IT+ +G + TG TAD+RS V +AR EAA +++K+GYE+PVD+L + IAD SQVYTQ+A MRPLG   +++GIDEE+GPQ+YKCDPAG++ G KAT+AG+K+ E+ +FLEKK+K    +++E+TV+TA++ L
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202          
BLAST of DC900336 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.734e-57
Identity = 110/195 (56.41%), Postives = 146/195 (74.87%), Query Frame = -1
Query:    6 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFS-YEETVQTAVSAL 587
            +DR IT+FSPEGRL+QVEYAFKA     ITS+GV GK+  CV++QKKVPDKL+D + V H+FPITK +G + TG+ ADAR+ V +AR+EAAE+ +K GY MP DVL++ +A+ +QV TQ A MRPLGV   ++ +D+E GP L+K DPAG + G+KATSAG K+ E IN+LEK+ K D   S   +TV+T + AL
Sbjct:    7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQAL 201          
The following BLAST results are available for this feature:
BLAST of DC900336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA6_TOBAC1.297e-10192.82Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_SOYBN6.663e-9888.72Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6B_ARATH4.319e-9786.67Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_ORYSJ9.621e-9788.21Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6A_ARATH2.370e-9584.62Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6_RAT6.725e-6661.34Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE6.725e-6661.34Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN6.725e-6661.34Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN6.725e-6661.34Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_SCHPO9.734e-5756.41Probable proteasome subunit alpha type-6 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionDC900336 VSS Citrus sinensis cDNA clone VS28687 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900336 ID=DC900336; Name=DC900336; organism=Citrus sinensis; type=EST; length=950bp
GATTGCAGAGCAGAGACAGCAGTCTGAACTGTTTCCTCATAAGAAAAGGC
AGGATCATTTTTCATTTTCTTTTCCAAGAAATTGATTGCCTCTTGCTCTT
TCAGTCCAGCACTCGTTGCCTTGTGACCAAAAAAATGTCCAGCAGGATCA
CATTTGTAAAGTTGAGGCCCTTTCTCTTCATCGATACCCAAAACCATAGC
AACAACTCCAAGAGGTCTCATATAAGCATGCTGGGTATAAACCTGTGACT
TGTCTGCAATCCATCTGGACAAAACATCTACTGGCATTTCATATCCAAAT
TTGAACCGATATTCAGCAGCTTCATTCCTTGCTTGGTGAACCAAGGACCT
AGCATCAGCTGTGTTGCCGGTGGCCAACAATCCAAGGTACTTGGTAATAG
GGAAAAGATGGGTGACACAAGTCTGATCCAAAAGCTTGTCAGGGACCTTC
TTCTGAGTGACAACACAGACAGAGTCCTTGCCGCGAACACCAATGGAAGT
GATGGCAGTGGCCTTTACAGCCTTAAACGCATACTCAACTTGGAAGAGAC
GACCCTCGGGAGAGAAGATGGTGATGTGGCGATCGTAGCCGGCTCCGCTT
CCTCTACTCATTCTCGATTTTTTTTTTCCAGAGGTGAATGATGAGGATGA
TGATGAAGAAGGCAGTGGCGAGGAGGATGATGATGAATAGAAGTTGAAGG
AAGAAATTAGCATAGTCATGTTAGGCTGTGACAATGTTTCAAACAACATA
TGTTAATGCTTTGTGCTTCCATGTTAATTTTTTTGGATGCTTTCATCATC
TTCATCATCATGTAAGAGAATCATGTTGCTTCTCCCTCGACATTTTCTTA
TGCCTGCCTTTCAAAGAATTAATAGCTGTAGGTGGGAGATTCACTGCTCT
ATATGTACTGTGTTCTAAAGCTTAATGATTTAGCTAAGGCGTTCCATCGT
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