CX043718

Overview
NameCX043718
Unique NameCX043718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9479 contig Csv1_Contig9479:1111..1903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CYSZ_CUCMA (Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.937e-90
Identity = 162/180 (90.00%), Postives = 171/180 (95.00%), Query Frame = -2
Query:  251 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERMIEKNADRLGQVSVSNATRRRLAGSG 790
            VLKML+EIGTV NIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFP EFF VLFAIPRMAGYLAHWRESLDDPDTKI+RPQQVYTG W+RHY+P  ER++   ADRLGQVSVSNA++RRL+GSG
Sbjct:  336 VLKMLSEIGTVNNIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPPEFFTVLFAIPRMAGYLAHWRESLDDPDTKIIRPQQVYTGEWLRHYIPPNERLVPAKADRLGQVSVSNASKRRLSGSG 515          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY3_ARATH (Citrate synthase 3, peroxisomal OS=Arabidopsis thaliana GN=CSY3 PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.327e-87
Identity = 156/182 (85.71%), Postives = 172/182 (94.51%), Query Frame = -2
Query:  254 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERMI---EKNADRLGQVSVSNATRRRLAGS 790
            VLKML+EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVI+ LA+EVFSIVG+DPLIEVAVALEKAALSD+YFVKRKLYPNVDFYSGLIYRAMGFP EFF VLFAIPRMAGYL+HW+ESLDDPDTKIMRPQQVYTGVW+RHY P++ER++    K +D+LGQV+ SNA+RRRLAGS
Sbjct:  326 VLKMLSEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIKNLADEVFSIVGKDPLIEVAVALEKAALSDDYFVKRKLYPNVDFYSGLIYRAMGFPPEFFTVLFAIPRMAGYLSHWKESLDDPDTKIMRPQQVYTGVWLRHYTPVRERIVTDDSKESDKLGQVATSNASRRRLAGS 507          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY2_ARATH (Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.155e-86
Identity = 155/181 (85.64%), Postives = 169/181 (93.37%), Query Frame = -2
Query:  254 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERMI--EKNADRLGQVSVSNATRRRLAGS 790
            VLKML EIGT ENIP+FIEGVKNRKRKMSGFGHRVYKNYDPRAKVI+KLA+EVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFP EFF VLFA+PRMAGYL+HWRESLDDPDT+IMRPQQ YTGVWMRHY P++ER +  + + D+ GQVS+SNA+RRRLAGS
Sbjct:  331 VLKMLAEIGTAENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIKKLADEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPPEFFTVLFAVPRMAGYLSHWRESLDDPDTRIMRPQQAYTGVWMRHYEPVRERTLSSDSDKDKFGQVSISNASRRRLAGS 511          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY1_ARATH (Citrate synthase 1, peroxisomal OS=Arabidopsis thaliana GN=CSY1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.768e-64
Identity = 117/153 (76.47%), Postives = 135/153 (88.24%), Query Frame = -2
Query:  329 LKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 787
            + ML+EIGTVENIPEFIE VKN+KR++SGFGHR+YKNYDPR KV++KLA+EVFSI+GRDPL+EV  ALEKAALSDEYFVKRKLYPNVDFYSGLI RAMG P+ F     A+ R+AGYL+HWRESLDDPDTKIMRPQQVYTG  +RHY  ++ER
Sbjct:  329 INMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSF----TAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRER 477          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISYP_DICDI (Citrate synthase, peroxisomal OS=Dictyostelium discoideum GN=cshA PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.402e-60
Identity = 112/175 (64.00%), Postives = 136/175 (77.71%), Query Frame = -2
Query:  266 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERMIEKNADRLGQVSVSNATRRR 790
            VL ML  IG+ ENIP+FI  VK++K+K+ GFGHR+YKNYDPRAK+IR++A EVF  +G++PLIEVA  LEK AL DEYFV RKLYPNVDFYSGLIY+AMGFPT+ FPVLF IPR  G+LAHW E L+DP+TKI RP+QVY G W R+Y+P+  R     A    Q S S+AT +R
Sbjct:  314 VLDMLIHIGSKENIPQFISDVKSKKKKLMGFGHRIYKNYDPRAKIIRRVAYEVFESLGKEPLIEVATELEKQALEDEYFVSRKLYPNVDFYSGLIYKAMGFPTDMFPVLFTIPRAVGWLAHWVEHLEDPETKIYRPRQVYKGEWFRNYVPIDGR---PPAKVRSQDSYSSATTKR 485          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISYC_DICDI (Citrate synthase OS=Dictyostelium discoideum GN=gltA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 96/177 (54.24%), Postives = 140/177 (79.10%), Query Frame = -2
Query:  266 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERMIEK--NADRLGQVSVSNATRRR 790
            VL+ML  IGT+ENIP+FIE VK +K+++ GFGHRVYK+YDPRAK+++ +  E+F+++G++PL+++A  LE+ ALSD YF++R+LYPNVDFYSG+IY++MGFPT+ FPVLF+IPR AG+LAHW E L DP+ +I RP+Q+Y G    +Y+P+  R +++  + ++L   S S   RRR
Sbjct:  295 VLRMLEAIGTIENIPKFIEQVKQKKQRLMGFGHRVYKSYDPRAKILKTVTMEIFALLGKNPLMQIATELERLALSDSYFIERQLYPNVDFYSGIIYKSMGFPTDMFPVLFSIPRAAGWLAHWVEELADPELRIFRPRQIYMGRRNMNYVPMDARQVQQHNSGEKLSSFS-SGFDRRR 470          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY2_RHITR (Citrate synthase, plasmid OS=Rhizobium tropici GN=pcsA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.399e-46
Identity = 85/157 (54.14%), Postives = 119/157 (75.80%), Query Frame = -2
Query:  329 LKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 787
            L ML EIGTV+ IPE+I   K++    ++ GFGHRVYKNYDPRAK+++K A EV   +G   DPL+++A+ LE+ AL+D+YF+++KLYPNVDFYSG+  +A+GFPT  F VLFA+ R  G++A W E ++DPD +I RP+Q+YTG  +R Y+PL +R
Sbjct:  273 LNMLTEIGTVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTAHEVLGELGIKDDPLLDIAIELERIALTDDYFIEKKLYPNVDFYSGITLKALGFPTTMFTVLFALARTVGWIAQWNEMIEDPDQRIGRPRQLYTGAPLREYVPLSKR 429          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_BARHE (Citrate synthase OS=Bartonella henselae GN=gltA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.890e-46
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = -2
Query:  326 LKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKERM 787
            LKML EIG+VE IPEFI   K++    ++ GFGHRVYKNYDPRAK++++   EV   +    DPL+++A+ LE  AL+DEYF+++KLYPNVDFYSG+  +A+GFPTE F VLFA+ R  G++A W+E ++DP  KI RP+Q+YTG   R Y+P+ +R+
Sbjct:  273 LKMLQEIGSVERIPEFIARAKDKNDSFRLMGFGHRVYKNYDPRAKIMQQTCHEVLKELNIQNDPLLDIAITLENIALNDEYFIEKKLYPNVDFYSGITLKALGFPTEMFTVLFALARSVGWVAQWKEMIEDPAQKISRPRQLYTGYAAREYIPIDKRV 430          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY1_RHITR (Citrate synthase, chromosomal OS=Rhizobium tropici GN=ccsA PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.292e-45
Identity = 84/157 (53.50%), Postives = 118/157 (75.16%), Query Frame = -2
Query:  329 LKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 787
            L ML EIGTV+ IPE+I   K++    ++ GFGHRVYKNYDPRAK+++K A EV   +G   DPL+++A+ LE+ AL+D+YF+++KLYPNVDFYSG+  +A+GFPT  F VLFA+ R  G++A W E ++DPD +I RP+ VYTG  +R Y+P+ +R
Sbjct:  273 LNMLTEIGTVDRIPEYIARAKDKNDPFRLMGFGHRVYKNYDPRAKIMQKTAHEVLGELGIKDDPLLDIAIELERIALTDDYFIEKKLYPNVDFYSGITLKALGFPTTMFTVLFALARTVGWIAQWNEMIEDPDQRIGRPRHVYTGAPLREYVPVSKR 429          
BLAST of CX043718 vs. ExPASy Swiss-Prot
Match: CISY_BRAJA (Citrate synthase OS=Bradyrhizobium japonicum GN=gltA PE=3 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.908e-45
Identity = 87/157 (55.41%), Postives = 115/157 (73.25%), Query Frame = -2
Query:  329 LKMLNEIGTVENIPEFIEGVK--NRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGR--DPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQVYTGVWMRHYMPLKER 787
            L ML EIG+V+ IPEFI  VK  N + ++ GFGHRVYKNYDPRAK+++K+   V    G   DP+++VA+ LEK ALSD+YF+ RKLYPNVDFYSG+  +AMGFP   F VLFA+ R  G+++ W E ++DP  KI RP+Q+YTGV  R Y+ +K+R
Sbjct:  277 LAMLAEIGSVDKIPEFIAKVKDKNSEVRLMGFGHRVYKNYDPRAKIMQKMCHAVLKETGHGDDPMLKVAMELEKIALSDQYFIDRKLYPNVDFYSGITLKAMGFPVSMFTVLFAVARTVGWISQWSEMIEDPQQKIGRPRQLYTGVTRRDYVAIKDR 433          
The following BLAST results are available for this feature:
BLAST of CX043718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSZ_CUCMA2.937e-9090.00Citrate synthase, glyoxysomal OS=Cucurbita maxima ... [more]
CISY3_ARATH2.327e-8785.71Citrate synthase 3, peroxisomal OS=Arabidopsis tha... [more]
CISY2_ARATH1.155e-8685.64Citrate synthase 2, peroxisomal OS=Arabidopsis tha... [more]
CISY1_ARATH2.768e-6476.47Citrate synthase 1, peroxisomal OS=Arabidopsis tha... [more]
CISYP_DICDI5.402e-6064.00Citrate synthase, peroxisomal OS=Dictyostelium dis... [more]
CISYC_DICDI1.522e-5454.24Citrate synthase OS=Dictyostelium discoideum GN=gl... [more]
CISY2_RHITR3.399e-4654.14Citrate synthase, plasmid OS=Rhizobium tropici GN=... [more]
CISY_BARHE9.890e-4653.80Citrate synthase OS=Bartonella henselae GN=gltA PE... [more]
CISY1_RHITR1.292e-4553.50Citrate synthase, chromosomal OS=Rhizobium tropici... [more]
CISY_BRAJA4.908e-4555.41Citrate synthase OS=Bradyrhizobium japonicum GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A05-B9-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043718 ID=CX043718; Name=CX043718; organism=Citrus sinensis; type=EST; length=791bp
GCATGATCGAGTAAGAGCAGCTCTGGAAATTCCAAATATAGAATCACACG
ACAGTTTCCCCTAATACACAGTGTGCGTGTGTGTTTATGTTACCAGTACA
AGGAACCAAAAAACATATGAACCTGCTACTTCTGTAGAAGATATTCAAAC
AGAAAACCAGAGGCCTGTAATTATTATTTTTCTTTATAATATTCATGTCA
TTTATTTTTCTTCTCTGAATATTTATTCATGAAGCCAAAAACATTTAATT
CCCTGATCCAGCGAGTCTTCGTCTTGTGGCATTTGAAACAGACACCTGTC
CAAGCCTGTCTGCATTCTTCTCTATCATCCGCTCTTTGAGTGGCATATAA
TGTCGCATCCATACACCAGTATAAACCTGTTGGGGTCTCATTATCTTTGT
GTCAGGATCATCCAAGGACTCTCGCCAGTGTGCTAAGTACCCAGCCATGC
GTGGGATGGCAAATAGAACAGGGAAAAACTCCGTTGGAAATCCCATTGCC
CTATATATCAACCCAGAGTAGAAGTCAACATTTGGATATAGCTTCCTCTT
AACAAAATACTCATCAGATAGTGCAGCCTTCTCCAAAGCAACAGCAACCT
CAATAAGAGGATCCCGGCCAACAATGGAAAATACTTCCTCTGCTAGTTTC
CTAATGACCTTTGCTCTGGGATCATAGTTTTTGTATACGCGGTGCCCAAA
ACCTGACATCTTCCTCTTTCTATTCTTCACACCTTCAATGAACTCGGGTA
TATTCTCAACTGTACCTATCTCATTCAGCATCTTAAGCACA
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