DC900335

Overview
NameDC900335
Unique NameDC900335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900335_ssr48 microsatellite DC900335_ssr48:48..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2029 contig Csv1_Contig2029:27..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_WHEAT (Eukaryotic translation initiation factor 4E-2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.464e-52
Identity = 94/141 (66.67%), Postives = 110/141 (78.01%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARGRTNLPYGPRQQQMKLLRW 505
            HKL+R+WTFW+D  +KPK GAAW +S++K YTFDTVEEFWCLY+QIF+PS+L  +ADFHLFK G+EPKWEDPECANGGKW+V S+RK NLDTMWLET MALIGEQFDE  EICG +  V            RQ+Q KL  W
Sbjct:   33 HKLQRQWTFWYDIQTKPKPGAAWGTSLKKGYTFDTVEEFWCLYDQIFRPSKLVGSADFHLFKAGVEPKWEDPECANGGKWTVISSRKTNLDTMWLETCMALIGEQFDESQEICGVVASV------------RQRQDKLSLW 161          

HSP 2 Score: 70.4774 bits (171), Expect = 5.977e-12
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  415 DLWGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILD 537
            ++ GVVASVRQRQDKL+LWTKTA+NEA Q+ IGKKWKE++D
Sbjct:  143 EICGVVASVRQRQDKLSLWTKTASNEAVQVDIGKKWKEVID 183          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_MAIZE (Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.532e-51
Identity = 86/123 (69.92%), Postives = 103/123 (83.74%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARG 451
            HKL R+WTFW+D  +K K GAAW +S++K YTFDTVEEFW +Y+QIF+PS+L  NADFHLFK G+EPKWEDPECANGGKW+V  NRKA  +TMWLET+MALIGEQFDE ++ICG +  V ARG
Sbjct:   40 HKLHRQWTFWYDIQTKTKSGAAWGTSLKKAYTFDTVEEFWSMYDQIFRPSKLSGNADFHLFKAGVEPKWEDPECANGGKWTVPCNRKATFETMWLETLMALIGEQFDETEDICGIVASVRARG 162          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_ORYSJ (Eukaryotic translation initiation factor 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.482e-50
Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARG 451
            HKL R+W FW+D  SKPK GAAW +S+RK YTFDTVEEFW LY+QIF+PS++ +NADFHLFK G+EPKWEDPECANGGKW+V  +RK  L+ MWLET+MALIGEQFDE +EICG +  V  RG
Sbjct:   30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRG 152          

HSP 2 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  415 DLWGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILD 537
            ++ GVVASVRQR DKLALWT+TA+NEA Q+ IGKKWKEI+D
Sbjct:  140 EICGVVASVRQRGDKLALWTRTASNEAVQVNIGKKWKEIVD 180          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E2_ARATH (Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 6.760e-48
Identity = 94/160 (58.75%), Postives = 113/160 (70.62%), Query Frame = 2
Query:   71 QSQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWS--VTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARGRTNLPYGPRQQQMKLLRWALERSGRRSLMSL 544
            + Q HKLERKW+FWFDN SK  +GAAW +S+RK YTFDTVE+FW L+E IF+ S+L  NA+ HLFK G+EPKWEDPECANGGKW+  VT+NRK  LD  WLET+MALIGEQFDE DEICG +  V           P+ +Q KL  W   +S    LM +
Sbjct:   22 EKQPHKLERKWSFWFDNQSK--KGAAWGASLRKAYTFDTVEDFWGLHETIFQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGEQFDEADEICGVVASV----------RPQSKQDKLSLWTRTKSNEAVLMGI 169          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.026e-44
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELL 433
            H LE  WTFWFDN +   +  +W SS+R V+TF TVEEFW LY  +  PS+L   ADF+ FK  IEPKWEDP CANGGKW++T  ++ + D  WL T++ALIGEQFD  DEICG ++
Sbjct:   60 HPLEHSWTFWFDNPAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKS-DKSWLYTLLALIGEQFDHGDEICGAVV 175          

HSP 2 Score: 56.6102 bits (135), Expect = 1.026e-44
Identity = 22/43 (51.16%), Postives = 35/43 (81.40%), Query Frame = 1
Query:  409 G*DLWGVVASVRQRQDKLALWTKTAANEAAQMGIGKKWKEILD 537
            G ++ G V ++R +Q+++++WTK A+NEAAQ+ IGK+WKE LD
Sbjct:  167 GDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLD 209          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E1_MAIZE (Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.413e-37
Identity = 71/125 (56.80%), Postives = 85/125 (68.00%), Query Frame = 2
Query:   65 PPQSQLHKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLV 439
            P     H LE  WTFWFDN     + AAW SS+R ++TF TVEEFW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R    DT WL T++A+IGEQFD  DEICG ++ V
Sbjct:   37 PSPPATHPLEHSWTFWFDNPQSKSKQAAWGSSIRPIHTFSTVEEFWGLYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGR-GKSDTFWLHTLLAMIGEQFDYGDEICGAVVSV 160          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.148e-37
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = 2
Query:   65 PPQSQL---HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLV 439
            PPQ+     H LE  WTFWFDN     + A W SS+R ++TF TVE+FW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+ +  R    DTMWL T++A+IGEQFD  DEICG ++ V
Sbjct:   43 PPQANPAAPHPLEHAWTFWFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGR-GKSDTMWLHTLLAMIGEQFDYGDEICGAVVSV 169          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 4.545e-36
Identity = 71/154 (46.10%), Postives = 94/154 (61.04%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARGRTNLPYGPRQQQMKLLRWALERSGRRSLMSL 544
            H LE  WTFWFDN     +  AW S++  ++TF TVE+FW LY  I  PS+L + ADFH FK  IEPKWEDP CANGGKW+++  R    DT WL T++A+IGEQFD  DEICG ++ V            RQ+Q ++  W    +   + +S+
Sbjct:   40 HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGR-GKSDTFWLHTLLAMIGEQFDFGDEICGAVVSV------------RQKQERVAIWTKNAANEAAQISI 180          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E4_ARATH (Putative eukaryotic translation initiation factor 4E-4 OS=Arabidopsis thaliana GN=At1g29550 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.572e-35
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARG 451
            H  +  WTFWFDN S       W SS+R +YTF T+EEFW LY  I  P++    AD + FK  IEPKWEDP CANGGKWS+    KA L+  WL T++AL+GEQFD+ DEICG +L   ARG
Sbjct:   65 HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIEPKWEDPICANGGKWSMMF-PKATLECNWLNTLLALVGEQFDQGDEICGAVLNFRARG 186          
BLAST of DC900335 vs. ExPASy Swiss-Prot
Match: IF4E5_ARATH (Eukaryotic translation initiation factor 4E-5 OS=Arabidopsis thaliana GN=At1g29590 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.238e-33
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 2
Query:   83 HKLERKWTFWFDNISKPKQGAAWXSSMRKVYTFDTVEEFWCLYEQIFKPSRLPMNADFHLFKTGIEPKWEDPECANGGKWSVTSNRKANLDTMWLETMMALIGEQFDEVDEICGELLLVYARG 451
            H  +  WTFWFDN S       W SS+R +YTF T+EEFW LY  I  P++    +D + FK  IEPKWEDP CANGGKW++   R A L++ WL T++AL+GEQFD+ DEICG +L    RG
Sbjct:   65 HCFQNSWTFWFDNPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDLYCFKDKIEPKWEDPICANGGKWTMFFPR-ATLESNWLNTLLALVGEQFDQGDEICGAVLNFRTRG 186          
The following BLAST results are available for this feature:
BLAST of DC900335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E2_WHEAT3.464e-5266.67Eukaryotic translation initiation factor 4E-2 OS=T... [more]
IF4E2_MAIZE8.532e-5169.92Eukaryotic translation initiation factor 4E-2 OS=Z... [more]
IF4E2_ORYSJ2.482e-5069.92Eukaryotic translation initiation factor 4E-2 OS=O... [more]
IF4E2_ARATH6.760e-4858.75Eukaryotic translation initiation factor 4E-2 OS=A... [more]
IF4E1_ARATH1.026e-4456.41Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E1_MAIZE1.413e-3756.80Eukaryotic translation initiation factor 4E-1 OS=Z... [more]
IF4E1_ORYSJ3.148e-3756.25Eukaryotic translation initiation factor 4E-1 OS=O... [more]
IF4E1_WHEAT4.545e-3646.10Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E4_ARATH8.572e-3554.47Putative eukaryotic translation initiation factor ... [more]
IF4E5_ARATH1.238e-3352.03Eukaryotic translation initiation factor 4E-5 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionDC900335 VSS Citrus sinensis cDNA clone VS28685 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900335 ID=DC900335; Name=DC900335; organism=Citrus sinensis; type=EST; length=545bp
AAACAAAGAAGAGAGAGATATGGCAACAAGTGAGGAGGCAAGCGCGACGG
CGGCGGCGGAGGTGCCGCCGCAATCACAGCTGCACAAGCTCGAGAGAAAA
TGGACGTTTTGGTTCGACAACATATCAAAGCCCAAACAGGGCGCCGCGTG
GNGCTCCTCTATGCGCAAAGTCTACACCTTCGACACTGTCGAAGAATTTT
GGTGTTTGTATGAACAGATATTCAAGCCAAGCCGGTTGCCAATGAATGCG
GATTTCCATTTGTTCAAAACTGGGATAGAACCAAAGTGGGAAGATCCTGA
GTGTGCAAATGGAGGAAAGTGGTCGGTCACTAGCAACAGGAAGGCTAACC
TTGATACCATGTGGCTTGAAACAATGATGGCCCTGATTGGAGAGCAATTT
GATGAGGTGGATGAGATTTGTGGGGAGTTGTTGCTAGTGTACGCCAGAGG
CAGGACAAACTTGCCTTATGGACCAAGACAGCAGCAAATGAAGCTGCTCA
GATGGGCATTGGAAAGAAGTGGAAGGAGATCCTTGATGTCACTGA
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