DC900333

Overview
NameDC900333
Unique NameDC900333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2913 contig Csv1_Contig2913:327..1076. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG2_ORYSJ (Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.955e-40
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 3
Query:    3 SIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 305
            S+ P+ ERVDEYGLG RESLAEAVSAVI +LGMQPCEGT+VV +NSRSHTCLLSGVFIGNVKVLVRL FG+ GPKEVAMKLAVRS+D  +SD IHEIVA+G
Sbjct:  789 SMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG 889          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG1_ORYSJ (Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica GN=Os03g0227000 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.702e-40
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 3
Query:    3 SIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 305
            ++ P+ ERVDEYGLG RESLAEAVSAVIS+LGMQPCEGTEVV  N+RSHTCLLSGVFIG+ KVLVRL FG+ GPKEVAMKLAVRS+D  VSD IHEIVASG
Sbjct:  784 NMDPESERVDEYGLGVRESLAEAVSAVISILGMQPCEGTEVVPKNARSHTCLLSGVFIGDAKVLVRLSFGLSGPKEVAMKLAVRSDDPEVSDKIHEIVASG 884          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG_ARATH (Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.357e-33
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 3
Query:    3 SIGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGIDGPKEVAMKLAVRSEDDNVSDMIHEIVASG 305
            S+  + ERVDEYGLG RESL EAV AV+ LLGMQ CEGTE +  N+RSHTCLLSGV+IGNVKVLVR QFG+D  K++AMKL VR+ED +V++ IHEIVASG
Sbjct:  786 SMDEEDERVDEYGLGQRESLGEAVKAVMDLLGMQTCEGTETIPLNARSHTCLLSGVYIGNVKVLVRAQFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVASG 886          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG2_DANRE (Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 3
Query:    6 IGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 284
            +G + E+ + + L    +L EAV+ ++S LGMQPCE ++ V  N  SH   L+GVF G   VLVR +  + DG   V +++ VRS DDNV D+I
Sbjct:  778 VGDECEKEETFALATVRTLDEAVNNIVSFLGMQPCERSDKVPENKNSHVLFLAGVFRGGHDVLVRARLALADG---VTIQVTVRSTDDNVVDVI 868          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG2_TAKRU (Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 3
Query:    6 IGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 284
            +G +FE+ + + L    +L EAV  +IS LGMQPCE ++ V  N  SH   L+GVF G   VLVR +  + DG   V M++ VRS ++ V D+I
Sbjct:  778 VGDEFEKEETFALASVRTLDEAVGNIISFLGMQPCERSDKVPENKNSHVLFLAGVFRGGHDVLVRARLALADG---VTMQVTVRSSEETVVDVI 868          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG2_XENTR (Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.907e-11
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 3
Query:    6 IGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 284
            IG  +E+ + + L   +SL EAV+ +I  LGMQPCE ++ V  N  SH   LSGV+ G   VLVR +  + DG   V M++ VRS+D+  +++I
Sbjct:  777 IGDTYEKEETFALTTTKSLEEAVNNIIKFLGMQPCERSDKVPENKNSHVLYLSGVYRGGHDVLVRSRLALADG---VTMQVTVRSQDETPANVI 867          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG2_XENLA (Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 3
Query:    6 IGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 284
            +G  +E+ + + L   ++L EAV+ +I  LGMQPCE ++ V  N  SH   LSGVF G    LVR +  + DG   V M++ VRS+D+  +D+I
Sbjct:  777 VGDAYEKEETFALTTTKTLEEAVNNIIKFLGMQPCERSDKVPENKNSHVLYLSGVFRGGHDALVRSRLALADG---VTMQVTVRSQDETPADVI 867          
BLAST of DC900333 vs. ExPASy Swiss-Prot
Match: COPG2_HUMAN (Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = 3
Query:    6 IGPDFERVDEYGLGPRESLAEAVSAVISLLGMQPCEGTEVVANNSRSHTCLLSGVFIGNVKVLVRLQFGI-DGPKEVAMKLAVRSEDDNVSDMI 284
            +G  FE+ + + L   ++L EAV+ +I+ LGMQPCE ++ V  N  SH+  L+G+F G   +LVR +  + DG   V M++ VRS++    D+I
Sbjct:  776 VGDTFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALADG---VTMQVTVRSKERTPVDVI 866          
The following BLAST results are available for this feature:
BLAST of DC900333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
COPG2_ORYSJ1.955e-4081.19Coatomer subunit gamma-2 OS=Oryza sativa subsp. ja... [more]
COPG1_ORYSJ9.702e-4081.19Coatomer subunit gamma-1 OS=Oryza sativa subsp. ja... [more]
COPG_ARATH1.357e-3370.30Coatomer subunit gamma OS=Arabidopsis thaliana GN=... [more]
COPG2_DANRE2.252e-1242.55Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 P... [more]
COPG2_TAKRU2.941e-1242.55Coatomer subunit gamma-2 OS=Takifugu rubripes GN=c... [more]
COPG2_XENTR1.907e-1141.49Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=... [more]
COPG2_XENLA2.490e-1140.43Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg... [more]
COPG2_HUMAN9.462e-1138.30Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 ... [more]
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Properties
Property NameValue
Genbank descriptionDC900333 VSS Citrus sinensis cDNA clone VS28683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900333 ID=DC900333; Name=DC900333; organism=Citrus sinensis; type=EST; length=749bp
AAAGCATAGGCCCAGACTTTGAGCGTGTAGATGAATATGGCCTTGGCCCA
AGGGAAAGTCTGGCTGAAGCTGTTAGTGCTGTCATCAGCCTTCTTGGCAT
GCAGCCTTGTGAGGGCACGGAAGTTGTTGCAAACAATTCAAGGTCACATA
CATGTCTACTGTCTGGTGTTTTCATTGGCAACGTCAAGGTCCTAGTGCGT
TTGCAGTTTGGAATTGATGGTCCAAAGGAGGTTGCAATGAAACTGGCCGT
TAGATCCGAGGATGATAATGTCAGCGACATGATTCACGAGATTGTAGCTA
GCGGCTGAAACTGAAAGCAATCATCATTTTTCCTTTTACACTGTACTCTG
GCCTTTTTTAGTTTTTTTTGAACGAGATTAGGCAGATGGCTGCAGTAAAG
ACGAGCTTGTAGAAAAAACTTTTGGATTCCTGGATTGAGGGTTATTGGTG
CTTTGGGAATTATTTGGGTCCGTCGAATGATAATAATATTCTTTGTATAA
TGCTCTAGCCAAATTCTATTAGGAAGGAACTTTTTTTTTTTGCCCTAATT
TTGAAAGCCTTTTAAANNGGGATTAAGTATAGGTGCCATCAAGCCTGCTT
AATTTACTTACGCCCCCCATATACGCATATATGTATTTTAAGTTGTGACC
TTGTTTACAGTGTCGTTATTACTAAGCAGATTGAATTTTGGAATGTATTA
TTCTCGTGCAACAATGTCGATTTTTATTGGAAATTAAAACGTGTTTACT
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