CX043709

Overview
NameCX043709
Unique NameCX043709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2482 contig Csv1_Contig2482:17..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043709 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.346e-58
Identity = 113/168 (67.26%), Postives = 142/168 (84.52%), Query Frame = -3
Query:  303 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGS--SKVQIQETDEARKKFFNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDIFFLKNIAGETGKKLSSLASSLITDIQDRIL 800
            FASRFEY D++QS   S GG QVL+HVAPPKSSSFF+D+GMD+ F KKS S  SK Q++E+DEARKKF NAKSISS+Q+FGDQN + D++++ +LQKF+GSASISSAD +GHD D++++D+ ASDLINRLSFQAQQD+  L NIAGET KKL +LAS + +DIQDR+L
Sbjct:  246 FASRFEYNDDLQSGGQSVGGTQVLNHVAPPKSSSFFSDFGMDSSFPKKSSSNSSKSQVEESDEARKKFTNAKSISSAQYFGDQNKNADLESKATLQKFAGSASISSADFYGHDQDDSNIDITASDLINRLSFQAQQDLSSLVNIAGETKKKLGTLASGIFSDIQDRML 413          
BLAST of CX043709 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.612e-53
Identity = 106/168 (63.10%), Postives = 136/168 (80.95%), Query Frame = -3
Query:  303 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNGFQKKSGSS--KVQIQETDEARKKFFNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDIFFLKNIAGETGKKLSSLASSLITDIQDRIL 800
            FASRFEY D+ QS   S  G +VLSHVAPPKSS+FF ++GMD+ F KKS SS  K Q++ETDEARKKF NAKSISS+QFFG+QN   D+D++ +LQKFSGSA+ISS+DLFGH  D++++D+ ASDLINR+SFQAQQD+  + N+A ET  KL + ASS+ +D+QDR+L
Sbjct:  237 FASRFEYFDDEQSGGQS--GTRVLSHVAPPKSSNFFNEFGMDSAFPKKSSSSSSKAQVEETDEARKKFSNAKSISSAQFFGNQNRDADLDSKATLQKFSGSAAISSSDLFGHGPDDSNIDITASDLINRISFQAQQDMSSIANLAEETKNKLGTFASSIFSDLQDRML 402          
BLAST of CX043709 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 104/161 (64.60%), Postives = 124/161 (77.02%), Query Frame = -3
Query:  330 FASRFEYVDNVQSSELSSGGPQVLSHVAPPKSSSFFADYGMDNG--FQKK--SGSSKVQIQETDEARKKFFNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDIFFLKNIAGETGKKLSSLASSL 800
            F+SRF+Y DNVQ+ E     PQV+SHVAPPKSS FF +    NG  FQKK  + SSK+QIQETDEARKKF NAKSISS+Q+FG+ NNS D++ + SL+KFSGS++ISSADLFG    +  LDL A DL+NRLS QAQQDI  LKN+A ET KKL S+ASSL
Sbjct:  234 FSSRFDYADNVQNRE-DYMSPQVVSHVAPPKSSGFFEEELEMNGGRFQKKPITSSSKLQIQETDEARKKFTNAKSISSAQYFGNDNNSADLEAKSSLKKFSGSSAISSADLFGDGDGDFPLDLTAGDLLNRLSLQAQQDISSLKNMAEETKKKLGSVASSL 393          
BLAST of CX043709 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -3
Query:  309 IQETDEARKKFFNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDIFFLKNIAGETGKKLSSLASSLITDIQDR 635
            ++ TDEA+KKF N K+ISS  +FG Q  + D +T+  L++ S S+SISSADLF      A+ + + S ++      AQ    F + +    G KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQAQA-DYETRARLERLSASSSISSADLFEEQRKQAAGNYSLSSVLPNAPDMAQ----FKQGVRSVAG-KLSVFANGVVTSIQDR 513          
BLAST of CX043709 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  309 IQETDEARKKFFNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDIFFLKNIAGETGKKLSSLASSLITDIQDR 635
            ++ TDEA+KKF N K+ISS  +FG Q  + D +T+  L++ S S+SISSADLF      A+ + + S+++      AQ    F + +    G KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQAQA-DYETRARLERLSASSSISSADLFEEQRKQAAGNYSLSNVLPSAPNMAQ----FKQGVRSVAG-KLSVFANGVVTSIQDR 513          
BLAST of CX043709 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = -3
Query:  309 IQETDEARKKFFNAKSISSSQFFGDQNNSIDMDTQVSLQKFSGSASISSADLFGHDSDNASLDLAASDLINRLSFQAQQDIFFLKNIAGETGKKLSSLASSLITDIQDR 635
            ++ TDEA+KKF N K+ISS  +FG Q+ + D +T+  L++ S S+SISSADLF       + + + S ++      AQ    F + +    G KLS  A+ ++T IQDR
Sbjct:  411 VENTDEAQKKFGNVKAISSDMYFGRQSQA-DYETRARLERLSASSSISSADLFEEPRKQPAGNYSLSSVLPNAPDMAQ----FKQGVRSVAG-KLSVFANGVVTSIQDR 513          
The following BLAST results are available for this feature:
BLAST of CX043709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AGD8_ARATH2.346e-5867.26Probable ADP-ribosylation factor GTPase-activating... [more]
AGD9_ARATH6.612e-5363.10Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH5.994e-4664.60ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB2.810e-1139.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA2.810e-1139.45ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_HUMAN6.261e-1138.53ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043709 ID=CX043709; Name=CX043709; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTTTTTTTTTTTACAAATATTATATTTATATATATTTGTATAGGT
TCCTTGGTTTACAACGAAGCCACGAAGGTACATAATATTGAATCGATTCA
CTAAATGAAAGGCACATGAAACTAGTCTCAAAACAAACACTGCTGAAACC
ACAATAAAAAGCCCAGTCGGTAGTATGCCAGCAAAATTCTAAAATTTTAT
TTGTCTTCCAAAAAAATTTTATGATCAAACTCATTTTACATTTCCTACAC
AAAATGTAGGCTGGTAAATGTAACAAACTCCAAACATATTCGAAAATTTT
CAAAGTATTCTGTCTTGAATATCTGTTATCAAACTTGACGCCAAGGAGCT
AAGTTTCTTTCCAGTCTCTCCCGCAATGTTCTTCAAAAAAAAAATATCTT
GTTGTGCCTGGAATGAAAGTCTGTTGATGAGGTCACTAGCAGCAAGATCA
AGTGAGGCATTGTCAGAGTCATGACCAAACAGATCAGCACTAGAGATCGA
TGCTGAACCTGAAAACTTTTGCAAAGAAACTTGAGTATCCATGTCAATAG
AGTTGTTCTGATCCCCAAAAAATTGGGATGATGAAATAGATTTTGCATTA
AAGAACTTCTTCCTTGCTTCATCAGTTTCTTGAATTTGTACTTTTGAGGA
GCCGGACTTCTTTTGAAAACCATTGTCCATTCCATAATCAGCAAAGAAGC
TTGACGACTTTGGTGGAGCTACATGGCTAAGCACTTGTGGACCACCAGAA
CTCAACTCGGAAGATTGGACATTATCCACATACTCAAAGCGAGAAGCAAA
GGGCAAAC
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