CX043708

Overview
NameCX043708
Unique NameCX043708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.752e-110
Identity = 199/244 (81.56%), Postives = 216/244 (88.52%), Query Frame = 1
Query:    1 TLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRA 732
            TLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENV IR E+KGLP  LAVN +ELCKYFEPGNHVKVVSGT  GATGMV+KV+QHV            RVFAD VVESSEVTTG+TKIGDYEL DLVLLDN SFGVIIR+E+EAFQVLKGVPDRPEVALVKLREIKCKLEKK NVQDR KN +AVKD VR++EGP KGKQGPV+HIY+G+LFI+DRHHLEHAGFICAK +SC+VVGGSR+
Sbjct:  416 TLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEVKGLPDPLAVNERELCKYFEPGNHVKVVSGTHEGATGMVVKVDQHV------------RVFADHVVESSEVTTGVTKIGDYELHDLVLLDNLSFGVIIRLENEAFQVLKGVPDRPEVALVKLREIKCKLEKKINVQDRYKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGGSRS 647          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 9.636e-101
Identity = 178/242 (73.55%), Postives = 206/242 (85.12%), Query Frame = 1
Query:    1 TLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGS 726
            TLFANRKKGHFMKGDAVIVIKGDLKNLKGW+EKVDEENV IR EMK LP  +AVN +ELCKYFEPGN VKVVSG   G TGM++KV+QH+LIILSDTTKE I VFAD V +S+EVT G+TKIGDYEL DLV+L + SFGVI++++SEA Q+LKGVPD  EV++VK  EIK K+ KK NVQDR KN VAVKDVVR++EGP KGKQGPV  IY+G+LFIHDRH+LEH GFIC + SSCV+ GG+
Sbjct:  403 TLFANRKKGHFMKGDAVIVIKGDLKNLKGWIEKVDEENVLIRSEMKDLPNPIAVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKSAEVTKGVTKIGDYELHDLVILSDFSFGVILKLDSEAIQILKGVPDSSEVSIVKASEIKYKIWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGPVVQIYKGVLFIHDRHNLEHTGFICTRCSSCVLAGGN 644          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.205e-38
Identity = 84/238 (35.29%), Postives = 143/238 (60.08%), Query Frame = 1
Query:   19 KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            ++ +F  GD V V +G+L NL+G V  VD   + I P+ + L   L   ++EL KYF+ G+HVKV++G   G TG++++VE++ +I+ SD T  +++V   D+   SE  +G+   G +E  +LV LD  + GVI+R+E E FQVL       +V  V+ + +  K + +  V  D ++N + VKD+V++++GP  G++G + H+YR   F+H +  +E+ G    K+   V+ GGS+
Sbjct:  414 REHNFQPGDNVEVCEGELINLQGKVLSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPRTVGVIVRLERETFQVLN---MHGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKVIDGPHSGREGEIRHLYRSFAFLHCKKLVENGGMFVCKARHLVLAGGSK 648          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.798e-38
Identity = 83/238 (34.87%), Postives = 143/238 (60.08%), Query Frame = 1
Query:   19 KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            ++ +F  GD V V +G+L NL+G +  VD   + I P+ + L   L   ++EL KYF+ G+HVKV++G   G TG++++VE++ +I+ SD T  +++V   D+   SE  +G+   G +E  +LV LD  + GVI+R+E E FQVL       +V  V+ + +  K + +  V  D  +N + VKD+V++++GP  G++G + H++RG  F+H +  +E+ G    K+   V+ GGS+
Sbjct:  413 REHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMY---GKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSK 647          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37
Identity = 82/238 (34.45%), Postives = 142/238 (59.66%), Query Frame = 1
Query:   19 KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            ++ +F  GD V V +G+L NL+G +  VD   + I P+ + L   L   ++EL KYF+ G+HVKV++G   G TG++++VE++ +I+ SD T  +++V   D+   SE  +G+   G +E  +LV LD  + GVI+R+E E FQVL       +V  V+ + +  K + +  V  D  +N + VKD+V++++GP  G++G + H++R   F+H +  +E+ G    K+   V+ GGS+
Sbjct:  412 REHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMY---GKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSK 646          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37
Identity = 82/238 (34.45%), Postives = 142/238 (59.66%), Query Frame = 1
Query:   19 KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            ++ +F  GD V V +G+L NL+G +  VD   + I P+ + L   L   ++EL KYF+ G+HVKV++G   G TG++++VE++ +I+ SD T  +++V   D+   SE  +G+   G +E  +LV LD  + GVI+R+E E FQVL       +V  V+ + +  K + +  V  D  +N + VKD+V++++GP  G++G + H++R   F+H +  +E+ G    K+   V+ GGS+
Sbjct:  416 REHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMY---GKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSK 650          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37
Identity = 82/238 (34.45%), Postives = 140/238 (58.82%), Query Frame = 1
Query:   19 KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQ-DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            ++ +   GD V V +G+L NL+G +  VD   + I P+ + L   L   + EL KYF  G+HVKV++G   G TG++++VE++ +I+ SD T  +++V   D+   SE  +G+   G +E  +LV LD  + GVI+R+E E FQVL       +V  V+ + +  + + +  V  D  +N + VKD+V++++GP  G++G + HI+RG  F+H +  +E+ G    K+   V+ GGS+
Sbjct:  415 REHNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQLDPQTVGVIVRLERETFQVLN---MHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKARHLVLAGGSK 649          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_DROME (Transcription elongation factor SPT5 OS=Drosophila melanogaster GN=Spt5 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.035e-35
Identity = 79/237 (33.33%), Postives = 137/237 (57.81%), Query Frame = 1
Query:   31 FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVL----KGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            F  GD V V  GDL+NL+  +  +D   + + P+ + L   L   + EL KYF+ G+H +V++G   G TG++++VE   ++++SD T  ++ V   D+   S+V TG+  +G ++  D+V LD+ + GVI+R+E E F VL    K +  +P  AL K +E      + +   D ++N +  +DVV+++EGP  G+ G ++H+YR + F+H R + E+ G    K+    + GGS+
Sbjct:  461 FSMGDNVEVCVGDLENLQAKIVAIDGTMITVMPKHQDLKDPLIFKASELRKYFKTGDHARVLAGRYEGETGLIIRVEPTRVVLVSDLTNHELEVLPRDLQLCSDVATGVDCLGQFQWGDMVQLDSQNVGVIVRLERENFHVLGMNGKCIECKP-TALHKRKE-----NRHTVALDADQNQIRRRDVVKVMEGPHAGRSGEIKHLYRSLAFLHCRMYTENGGIFVCKTRHLQLAGGSK 691          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5H_CAEEL (Transcription elongation factor SPT5 OS=Caenorhabditis elegans GN=spt-5 PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.622e-31
Identity = 80/245 (32.65%), Postives = 138/245 (56.33%), Query Frame = 1
Query:   31 FMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDN-NSFGVIIRVESEAFQVLK--GVPDR--PEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQ-------GPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSR 729
            F+ GD V V  G+L NL+G V  VD   V + P+ + L + + +N+ EL KYF+ G+H KV+SG   G TG++++V+    I+LSD   E+++V   D+   ++VTTG+  +G ++  DLV LD+  + GVI+R+E E  +VL   GV +R  P+  + K      K  + + V D   N++  KD+V+++ GP   ++       G V + +RG +F++ R   ++ G +  K    ++ G  +
Sbjct:  421 FVPGDIVEVKAGELVNLRGKVMTVDGTKVVMMPDQEDLKEAITLNAHELRKYFKEGDHAKVISGRYEGHTGLIVRVKDSTAIVLSDLGMEELKVRVRDLQLCADVTTGVDSLGQFQYHDLVQLDHTGNVGVIVRLEKEHLEVLNMHGVVNRIKPQAIIAK------KDVRFAKVLDSQNNSIEAKDLVKVIGGPNAKERETDEDPVGEVLYAFRGTVFVYSRKVTKNGGVLVCKPKQLILQGAKK 659          
BLAST of CX043708 vs. ExPASy Swiss-Prot
Match: SPT5_USTMA (Transcription elongation factor SPT5 OS=Ustilago maydis GN=SPT5 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.162e-29
Identity = 76/225 (33.78%), Postives = 135/225 (60.00%), Query Frame = 1
Query:   43 DAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGL-PKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE-KKSNVQDRNKNTVAVKDVVRIVEGP-CKGKQGPVEHIYRG-ILFIHDRHHLEHAGFICAKSSS 705
            D V + +G+   + G V+ ++ E + I+ E + L  + + V ++ + K F+PG+H+KV+SG  A  TG+V+KVE +V   LSD + +++ VF+ D+ +++EV +G+  I  YEL +LV LD  + G+I  +E E+F+VL       +V  VK  +I  K +  ++   D + N +   D+V+ V GP  + +QG V HIY+  ++F+H+R + E+ G   A++ S
Sbjct:  572 DQVEIFEGEQAGVYGTVKAINNEVITIQLEHEDLMDQIVEVPARSVRKRFKPGDHIKVMSGKHADETGLVVKVEDNVTTFLSDLSMQEVSVFSKDIRQAAEVGSGVNVISGYELHNLVQLDAQTVGIIFNIERESFKVL---DQTGQVVTVKPHQISTKKDTSRAFALDHDGNEIRAGDMVKEVAGPFSRLRQGQVLHIYQSMVVFLHNREYTENGGVFIARARS 793          
The following BLAST results are available for this feature:
BLAST of CX043708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SPT51_ARATH1.752e-11081.56Putative transcription elongation factor SPT5 homo... [more]
SPT52_ARATH9.636e-10173.55Putative transcription elongation factor SPT5 homo... [more]
SPT5H_MOUSE5.205e-3835.29Transcription elongation factor SPT5 OS=Mus muscul... [more]
SPT5H_CHICK6.798e-3834.87Transcription elongation factor SPT5 OS=Gallus gal... [more]
SPT5H_PONAB3.374e-3734.45Transcription elongation factor SPT5 OS=Pongo abel... [more]
SPT5H_HUMAN3.374e-3734.45Transcription elongation factor SPT5 OS=Homo sapie... [more]
SPT5H_DANRE3.374e-3734.45Transcription elongation factor SPT5 OS=Danio reri... [more]
SPT5H_DROME7.035e-3533.33Transcription elongation factor SPT5 OS=Drosophila... [more]
SPT5H_CAEEL1.622e-3132.65Transcription elongation factor SPT5 OS=Caenorhabd... [more]
SPT5_USTMA1.162e-2933.78Transcription elongation factor SPT5 OS=Ustilago m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12H12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12H12-O24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043708 ID=CX043708; Name=CX043708; organism=Citrus sinensis; type=EST; length=738bp
ACATTATTTGCGAACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCAGT
TATTGTTATCAAGGGAGATCTAAAAAATTTGAAAGGTTGGGTTGAGAAGG
TTGATGAAGAGAATGTTCATATCAGACCAGAAATGAAAGGGCTTCCTAAA
ACCCTTGCCGTAAATTCAAAAGAGCTGTGCAAATATTTTGAACCAGGGAA
TCATGTGAAAGTTGTCTCGGGAACACAGGCAGGTGCAACTGGCATGGTTC
TAAAGGTTGAGCAACATGTTCTCATCATTCTATCTGACACAACCAAGGAA
GATATTCGTGTGTTTGCCGATGACGTTGTGGAGAGCTCTGAGGTTACTAC
TGGTATAACCAAAATTGGGGACTATGAGCTTCGTGATCTTGTTCTGCTGG
ATAACAATAGCTTTGGGGTGATAATACGTGTGGAAAGTGAAGCTTTTCAG
GTTCTGAAGGGAGTTCCTGATAGACCTGAGGTTGCTCTTGTTAAGTTGAG
AGAAATAAAATGCAAGCTCGAGAAGAAGTCTAATGTGCAAGATAGAAATA
AGAATACTGTTGCAGTGAAAGATGTTGTGAGGATTGTTGAGGGCCCATGC
AAAGGTAAACAAGGTCCTGTGGAACACATATATAGAGGAATTTTATTCAT
CCATGATCGACATCATCTTGAGCATGCTGGCTTTATTTGTGCTAAATCTA
GTTCTTGTGTTGTTGTGGGAGGATCACGTGCCAATGGG
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