CX043707

Overview
NameCX043707
Unique NameCX043707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9502 contig Csv1_Contig9502:545..1337. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.160e-94
Identity = 170/232 (73.28%), Postives = 194/232 (83.62%), Query Frame = -1
Query:  103 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGADNEGPWFMPDILV--RRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 792
            AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG+YSDAGTPRD  S Y NAPSPYLPSTP GQPMTP+SASY               GLD MSPVIG D E  WFMPDILV   ++GE++ VGVIR+V  DG+C+V LGSSG GDTI ALP+E+EI+PPRK+D++KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+LAK  QP
Sbjct:  827 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYL-PGTPGGQPMTPGTGLDVMSPVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1054          
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45
Identity = 110/242 (45.45%), Postives = 135/242 (55.79%), Query Frame = -1
Query:  112 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSSSTY------VNAPSP-------YLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 792
            AWNPY PMSPPRDNWEDGNPGSWGTSP           YEA TPGS W +STPG  +Y DAGTP ++   Y       NAPSP       YLP+TPGGQ MTP +                   LD ++     D    +F+        G             DGSC V LG  G G+TI A  N++ +V P+K +++KI+GG + G+T K+IG DG DGIVK+D SLD+KIL + ILAKL
Sbjct:  787 AWNPYMPMSPPRDNWEDGNPGSWGTSP-----------YEAATPGSDWGSSTPGRSSYRDAGTPINNGFVYYLLCLNANAPSPMTPSSTSYLPTTPGGQAMTPGT-------------DLDVMSLDIVNIFQFTDYVSLFFL-------CGHHQ----------DGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKILKLTILAKL 987          
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 81/239 (33.89%), Postives = 116/239 (48.54%), Query Frame = -1
Query:  106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVRRSG---EESVVG---VIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 789
            +NP TP +P   N +  +P +   SPQ  YQP  SP S    AP+P +G+ +T    +S A   P  S   Y  +PSP   S  G  PMTP + S                G +  +P  G + N   W   DI V+      +  VVG   VIR V   G C V L  S    +I++    +E + P K +K+K++ G  R ATG L+ +DG DGIV++D+   +KIL++  L KL +
Sbjct:  874 YNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSP-AGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLE 1086          
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 81/239 (33.89%), Postives = 115/239 (48.12%), Query Frame = -1
Query:  106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVRRSG---EESVVG---VIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 789
            +NP TP +P   N +  +P +   SPQ  YQP  SP S    AP+P +G+ +T    +S A   P  S   Y  +PSP   S  G  PMTP + S                G +  +P  G + N   W   DI V+      +  VVG   VIR V   G C V L  S    +I++    +E + P K +K+K++ G  R ATG L+ +DG DGIV++D    +KIL++  L KL +
Sbjct:  870 YNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSP-AGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDEQLKILNLRFLGKLLE 1082          
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 78/237 (32.91%), Postives = 112/237 (47.26%), Query Frame = -1
Query:  112 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGADN-EGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 789
            +NP TP +P   N +  +P +   SPQ  YQP  SP S    AP+P  G+ +T    +S A   P  S   Y  +PSP   S  G  PMTP + S                G +  +P    D     W   DI+VR        G  +  G+IR V   G C V L  +    +I++    +E V P K +K+K++ G  R ATG L+ +DG DGIV++++   +KIL++  L KL
Sbjct:  872 YNPQTPGTPAMYNTDQYSPYA-APSPQGSYQPSPSPQSYHQVAPSP-VGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVT-GGMCSVFLQDTEKVVSISS--EHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKL 1082          
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 80/239 (33.47%), Postives = 114/239 (47.70%), Query Frame = -1
Query:  106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 789
            +NP TP +P   N +  +P +   SPQ  YQP  SP S    AP+P  G+ +T    +S A   P  S   Y  +PSP   S  G  PMTP + S                G +  +P  G + +   W   DI V+       S      GVIR V   G C V L  S    +I++    +E V P K++K+K++ G  R ATG L+ +DG DGIV++D+   +KIL++  L KL +
Sbjct:  866 YNPQTPGTPAMYNTDQFSPYAV-PSPQGSYQPSPSPQSYHQVAPSP-VGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLE 1078          
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 79/240 (32.92%), Postives = 116/240 (48.33%), Query Frame = -1
Query:  106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVRRSG---EESVVG---VIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDV-SLDVKILDMAILAKLAQ 789
            +NP TP +P   N +  +P +   SPQ  YQP  SP S    AP+P +G+ +T    +S A   P  S   Y  +PSP   S  G  PMTP + S                G +  +P  G + N   W   DI V+      +  +VG   VIR V   G C V L  S    +I++    +E + P K +K+K++ G  R ATG L+ +DG DGI+++D+    +KIL++  L KL +
Sbjct:  868 YNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSP-AGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRFLGKLLE 1081          
The following BLAST results are available for this feature:
BLAST of CX043707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPT51_ARATH1.160e-9473.28Putative transcription elongation factor SPT5 homo... [more]
SPT52_ARATH1.698e-4545.45Putative transcription elongation factor SPT5 homo... [more]
SPT5H_HUMAN3.124e-1533.89Transcription elongation factor SPT5 OS=Homo sapie... [more]
SPT5H_PONAB6.960e-1533.89Transcription elongation factor SPT5 OS=Pongo abel... [more]
SPT5H_DANRE2.025e-1432.91Transcription elongation factor SPT5 OS=Danio reri... [more]
SPT5H_CHICK2.645e-1433.47Transcription elongation factor SPT5 OS=Gallus gal... [more]
SPT5H_MOUSE5.892e-1432.92Transcription elongation factor SPT5 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12H12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12H12-O24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043707 ID=CX043707; Name=CX043707; organism=Citrus sinensis; type=EST; length=792bp
TTTTTTTTTTTTTTTTTAAACAATATCCTCTAATAAATTTTACTCAAAAT
TTAGGAACAACAAATATACACTATGAATTTTCGTCTATAACCATGTTGCT
CATGGTTGTGCTAATTTTGCAAGTATAGCCATGTCTAATATCTTAACATC
AAGACTGACATCTACTTTTACAATTCCATCAGTACCATCCACACCAATTA
ATTTGCCTGTTGCACCGCGATGTGGACCACCCATTATCTTGATCTTGTCG
GTTTTCCTTGGCGGCACTATCTCTATTTCATTTGGAAGCGCCGTTATTGT
ATCACCATTCCCACTTGAACCAAGGACCACCCTACATGACCCATCCGGAA
GCACTTCTCGGATGACTCCAACAACCGATTCCTCTCCGGACCTACGTACC
AAGATGTCCGGCATGAACCATGGTCCTTCATTGTCCGCTCCTATAACAGG
AGACATAGCATCTAGACCACCAGTTCCAGGTGTCATGGGCTGCCCCCCAG
GAGTGCCAGGAAAATAGGATGCTGAGTTTGGCGTCATTGGCTGCCCACCT
GGAGTTGATGGCAGATAAGGGCTTGGAGCATTGACATAAGTCGAACTGCT
ATCTCTTGGTGTTCCAGCATCACTATAATTGCCACCCGGTGTACTAGCCC
AACCTGAACCAGGAGTAGGTGCTTCATATGCACGTGAAGGAGGACTTCCT
GGCTGATATTGTGGACTGGTTCCCCAGGAGCCAGGGTTTCCATCTTCCCA
ATTATCCCTAGGTGGACTCATTGGTGTATAAGGATTCCATGC
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