CX043707
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 1.160e-94 Identity = 170/232 (73.28%), Postives = 194/232 (83.62%), Query Frame = -1 Query: 103 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGADNEGPWFMPDILV--RRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 792 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG+YSDAGTPRD S Y NAPSPYLPSTP GQPMTP+SASY GLD MSPVIG D E WFMPDILV ++GE++ VGVIR+V DG+C+V LGSSG GDTI ALP+E+EI+PPRK+D++KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+LAK QP Sbjct: 827 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYL-PGTPGGQPMTPGTGLDVMSPVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1054
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45 Identity = 110/242 (45.45%), Postives = 135/242 (55.79%), Query Frame = -1 Query: 112 AWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSSSTY------VNAPSP-------YLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 792 AWNPY PMSPPRDNWEDGNPGSWGTSP YEA TPGS W +STPG +Y DAGTP ++ Y NAPSP YLP+TPGGQ MTP + LD ++ D +F+ G DGSC V LG G G+TI A N++ +V P+K +++KI+GG + G+T K+IG DG DGIVK+D SLD+KIL + ILAKL Sbjct: 787 AWNPYMPMSPPRDNWEDGNPGSWGTSP-----------YEAATPGSDWGSSTPGRSSYRDAGTPINNGFVYYLLCLNANAPSPMTPSSTSYLPTTPGGQAMTPGT-------------DLDVMSLDIVNIFQFTDYVSLFFL-------CGHHQ----------DGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKILKLTILAKL 987
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15 Identity = 81/239 (33.89%), Postives = 116/239 (48.54%), Query Frame = -1 Query: 106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVRRSG---EESVVG---VIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 789 +NP TP +P N + +P + SPQ YQP SP S AP+P +G+ +T +S A P S Y +PSP S G PMTP + S G + +P G + N W DI V+ + VVG VIR V G C V L S +I++ +E + P K +K+K++ G R ATG L+ +DG DGIV++D+ +KIL++ L KL + Sbjct: 874 YNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSP-AGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLE 1086
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15 Identity = 81/239 (33.89%), Postives = 115/239 (48.12%), Query Frame = -1 Query: 106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVRRSG---EESVVG---VIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 789 +NP TP +P N + +P + SPQ YQP SP S AP+P +G+ +T +S A P S Y +PSP S G PMTP + S G + +P G + N W DI V+ + VVG VIR V G C V L S +I++ +E + P K +K+K++ G R ATG L+ +DG DGIV++D +KIL++ L KL + Sbjct: 870 YNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSP-AGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDEQLKILNLRFLGKLLE 1082
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14 Identity = 78/237 (32.91%), Postives = 112/237 (47.26%), Query Frame = -1 Query: 112 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGADN-EGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 789 +NP TP +P N + +P + SPQ YQP SP S AP+P G+ +T +S A P S Y +PSP S G PMTP + S G + +P D W DI+VR G + G+IR V G C V L + +I++ +E V P K +K+K++ G R ATG L+ +DG DGIV++++ +KIL++ L KL Sbjct: 872 YNPQTPGTPAMYNTDQYSPYA-APSPQGSYQPSPSPQSYHQVAPSP-VGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVT-GGMCSVFLQDTEKVVSISS--EHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKL 1082
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14 Identity = 80/239 (33.47%), Postives = 114/239 (47.70%), Query Frame = -1 Query: 106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVR------RSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ 789 +NP TP +P N + +P + SPQ YQP SP S AP+P G+ +T +S A P S Y +PSP S G PMTP + S G + +P G + + W DI V+ S GVIR V G C V L S +I++ +E V P K++K+K++ G R ATG L+ +DG DGIV++D+ +KIL++ L KL + Sbjct: 866 YNPQTPGTPAMYNTDQFSPYAV-PSPQGSYQPSPSPQSYHQVAPSP-VGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLE 1078
BLAST of CX043707 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14 Identity = 79/240 (32.92%), Postives = 116/240 (48.33%), Query Frame = -1 Query: 106 WNPYTPMSPPRDNWEDGNPGSWGTSPQ--YQPG-SPPSRAYEAPTPGSGWASTPGGNYSDAGT-PRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYFXXXXXXXXXXXXXXGLDAMSPVIGAD-NEGPWFMPDILVRRSG---EESVVG---VIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDV-SLDVKILDMAILAKLAQ 789 +NP TP +P N + +P + SPQ YQP SP S AP+P +G+ +T +S A P S Y +PSP S G PMTP + S G + +P G + N W DI V+ + +VG VIR V G C V L S +I++ +E + P K +K+K++ G R ATG L+ +DG DGI+++D+ +KIL++ L KL + Sbjct: 868 YNPQTPGTPAMYNTDQFSPYA-APSPQGSYQPSPSPQSYHQVAPSP-AGYQNT----HSPASYHPTPSPMAYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSVYLKDSEKVVSISS--EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRFLGKLLE 1081 The following BLAST results are available for this feature:
BLAST of CX043707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043707 ID=CX043707; Name=CX043707; organism=Citrus sinensis; type=EST; length=792bpback to top |