DC900330

Overview
NameDC900330
Unique NameDC900330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5654 contig Csv1_Contig5654:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900330 vs. ExPASy Swiss-Prot
Match: NUS1_ASPOR (Nuclease S1 OS=Aspergillus oryzae GN=nucS PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 52/160 (32.50%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   12 ALMFLSHFIGDVHQPLHVGFIGDEGGNTITVRWYRRKTNLHHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG-WSNDVSSWENCANNQTVCPNG--YASESVSLACK------FAYRNATPGTTLEDDYFLTRLPIVEKRLAQSGIRLAATLNRIFS 464
            AL F+ H IGD+HQPLH   + + GGN I V +    TNLHH+WDT + + A   Y  S        +   I  G +S+   SW +  + +        +A+++ +  C        AY N+   T L  +Y+    P+ E+ +A++G RLAA L+ I S
Sbjct:  129 ALKFVVHIIGDIHQPLHDENL-EAGGNGIDVTYDGETTNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTVLDDGLAYINS---TDLSGEYYDKSQPVFEELIAKAGYRLAAWLDLIAS 284          
The following BLAST results are available for this feature:
BLAST of DC900330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUS1_ASPOR3.115e-1232.50Nuclease S1 OS=Aspergillus oryzae GN=nucS PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionDC900330 VSS Citrus sinensis cDNA clone VS28680 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900330 ID=DC900330; Name=DC900330; organism=Citrus sinensis; type=EST; length=669bp
ATTTAACAGAGGCGCTTATGTTTTTATCCCATTTTATTGGAGACGTGCAT
CAGCCTCTACATGTTGGTTTCATTGGAGATGAAGGTGGGAACACAATAAC
AGTCCGTTGGTACCGTCGAAAGACAAACCTACACCATGTATGGGATACCA
TGATAATTGATTCTGCTCTGAAGACCTATTATGATTCTGATATTGCAGTC
ATGATTCAATCCATTCAGAGGAATATTACGGATGGTTGGTCCAATGATGT
GTCATCATGGGAAAATTGTGCAAATAATCAAACAGTTTGTCCTAATGGAT
ACGCTTCTGAAAGTGTAAGTTTGGCATGCAAGTTTGCATACAGGAATGCC
ACACCAGGAACCACTTTGGAAGATGATTACTTCCTGACTCGATTGCCTAT
TGTGGAGAAAAGGCTTGCTCAAAGTGGCATCCGCTTAGCTGCTACCTTAA
ACCGCATATTTTCTTCTCAAATAAAAATTGCTCAACTATGAAGATAGAAG
GAATATAAGCACAAATTCGGAGGGATGGGCCCAGTACACCGTGTATATAG
CTTGAATTTCTTCAGACCAGAGATTTCATATACAATATTAACACTCCTTT
ATCTTTGCTGTCAACTCTTTCAAAACGAGCAAGGAACTGTACTTTATGAT
CACCCACCGAACCCATTGC
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