CX043702

Overview
NameCX043702
Unique NameCX043702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043702_ssr163 microsatellite CX043702_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
CX043702_ssr36 microsatellite CX043702_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1880 contig Csv1_Contig1880:23..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32
Identity = 72/134 (53.73%), Postives = 93/134 (69.40%), Query Frame = 2
Query:  287 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLTTLPVSLASQRPRRPVS-ISAVQTLEENPA------PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            MS VNL +W  T  + NQA+  RS       PF  L +L +S A ++  RP+S +SA+ T EE         P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHES+RYSLLAGGKRVRP LCLAAC+LVG
Sbjct:    1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIITKEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVG 134          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  353 RSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEEN--PAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            +S    P   +T  P+SL  +R     S S++ T E+N   + S +FDF SY+I+KA +VN+ALD+AV L++P+KIHE++RYSLLAGGKRVRPVLC+AAC+LVG
Sbjct:   24 QSRSRSPPSLITLKPISLTPKRTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVG 127          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.089e-21
Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  278 LTKMSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTLTTLPVS-------LASQRPRRPVSISAVQTLEENPA-----PSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            +  M+ V+L A  Q C +FNQ  S +S     F     +P+        L  +RP  P+++SA+ T +E+           F+FK Y+ +KA +VN+ALD A+ +K+P  IHE++RYSLLAGGKRVRP+LCLAAC+LVG
Sbjct:    1 MRSMNLVDLWA-QQACLVFNQTLSYKS-----FNGFMKIPLKNSKINPKLNKKRPFSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVG 133          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.039e-20
Identity = 63/137 (45.99%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  287 MSCVNLAAWT--------QTCSIFNQASSRRSNKTQPFRTLTTLPVSLASQRP---RRPVSISAVQTLEENPAPSP--TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            M+ V L +W            SI  ++ SR    T       T P+S  S+R       +  S+V T E+N   S   +FDF SY+I KA  VN+ALD+AV L++P+KIHE++RYSLLAGGKRVRPVLC+AAC+LVG
Sbjct:    1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPIT------LTKPISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVG 131          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = 2
Query:  353 RSNKTQPFRTLTTLPVSL-ASQRPRRPV------SISAV----QTLEENPAPSP---------TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            RSN   P +    LP+S   S   R+P+      SISA+    QT EE+ + S          +FDFK+YMI KA++VN+AL+ AV +++P+KIHES+RYSLLAGGKRVRP+LC+AAC+L G
Sbjct:    2 RSNLCHPLKN--QLPISFFLSGTIRKPIFSCSRLSISAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFG 121          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.658e-18
Identity = 45/106 (42.45%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  341 ASSRRSNKTQPFRTLTTLPVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            A++RR  +       + +  ++ +++  R    S+++ + E      +FDFK YMI KA T+N+ALD A+ L +P+ IH+++RY++LAGGKRVRP+LCLAAC+LVG
Sbjct:   31 ANTRRLIRLLHIPIKSPVAAAIFARKDTREFLDSSIKLVNEEDDFGFSFDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVG 136          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.075e-17
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  326 SIFNQASSRRSNKTQPFRTLTTL----PVSLASQRPRRPVSISAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            S+F Q+  RR N     ++L       P S  + +  R +     +  + N A    FDFK YMI+KA +VN ALD +V L++P+ + E+VRYSLLAGGKRVRP+LC+A C+LVG
Sbjct:   11 SLFIQSRGRRDNSISSVKSLKKRTGLSPSSALTSQGGRDMIPPEGKCNDHNSA----FDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVG 121          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 35/59 (59.32%), Postives = 51/59 (86.44%), Query Frame = 2
Query:  482 TFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            TF+F  YM+ KA +VN+AL+ A+ + +P+KIHE++RY++LA GKRVRP+LCLA+C+LVG
Sbjct:   82 TFEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVG 140          
BLAST of CX043702 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  416 RPRRPVSISAVQTLEEN-----PAPSPTFDFKSYMIQKASTVNQALDAA-------VSLKDPV-KIHESVRYSLLAGGKRVRPVLCLAACDLVG 658
            RPR  + +SA++ +  +        S   +F SYM  KA ++N+ALD +       V L +PV ++H+++RY+LL GGKRVRP+LCL AC+LVG
Sbjct:    2 RPRYSLILSAMRLIRPSNRRLSSIASSDSEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVG 95          
The following BLAST results are available for this feature:
BLAST of CX043702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GGPPS_HEVBR3.442e-3253.73Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL2.920e-2353.85Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN6.089e-2143.17Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.039e-2045.99Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_CATRO8.793e-2049.18Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH1.658e-1842.45Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP3_ARATH1.075e-1744.35Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP2_ARATH1.314e-1559.32Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH4.374e-1142.55Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12H09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12H09-O18-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043702 ID=CX043702; Name=CX043702; organism=Citrus sinensis; type=EST; length=658bp
AATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCTCCAC
CGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAAAAAA
AAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATTTCTG
TTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGGAGAG
GCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTCTCGC
ACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCGTCAA
TCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGCAGTC
GCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCCCGTT
TCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAGTTCA
AACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAGTCCT
ACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGCCGTT
TCGCTCAAGGACCCCGTGAAGATCCACGAATCCGTGCGATACTCTTTACT
GGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGTGACC
TCGTTGGT
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