DC900329

Overview
NameDC900329
Unique NameDC900329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 399.053 bits (1024), Expect = 1.609e-110
Identity = 192/235 (81.70%), Postives = 211/235 (89.79%), Query Frame = 3
Query:    3 KINSLPD--RKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KINS+ +  RKTYASRT+FFY+K G LRPLAIELSLPPT  S +NK +YTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWL THASMEPYIIAT+RQLS+MHP+YKLLHPHMRYTLEINA AR+SLINGGGIIE+ F+PG+YAMELSSAAYKS WRFDME LPADL+RRGMAEED S   GVRLVI+DYPYAADGLLIW AIK+ VESYV HFYS+  S+TSD+ELQAWW EI
Sbjct:  496 KINSIKEDPRKTYASRTIFFYSKNGALRPLAIELSLPPTAES-ENKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHASMEPYIIATNRQLSTMHPVYKLLHPHMRYTLEINARARKSLINGGGIIESCFTPGKYAMELSSAAYKSMWRFDMEGLPADLVRRGMAEEDSSAECGVRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEI 729          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.264e-87
Identity = 148/232 (63.79%), Postives = 185/232 (79.74%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +IN+L  RK YA+RT+FF  + G L+P+AIELSLPP     ++K + T   DAT++W+W+LAKAHV SNDAGVHQLVNHWL THA +EP+I+A HRQLS+MHPI+KLL PHMRYTLEINALARQSLI+  G+IE  F+ G Y ME+S+AAYKS WRFDME LPADL+RRGMA  D + P G++L+IEDYPYA DGLL+W AI+ WV +YV  +Y  PN + +D ELQ+W+SE
Sbjct:  500 RINALDGRKAYATRTIFFLTRLGTLKPVAIELSLPPHGPKHRSKRVLTPPVDATSNWMWQLAKAHVSSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLISADGVIEGGFTAGAYGMEMSAAAYKSSWRFDMEGLPADLIRRGMAIPDATQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSE 731          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 2.116e-86
Identity = 147/233 (63.09%), Postives = 182/233 (78.11%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPP-TRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +IN+   RK Y +R VFF   AG L+P+AIEL LPP T    + K ++T   DAT++W+W+LAKAHVCSNDAGVHQL+NHWL THA MEP+IIA HRQ+S+MHPI+KLL PHMRYTL+INALARQ LING G+IE+ F+PG   ME+S+ AY+  WR D E LPADL+RRGMA EDPS P G+RL+IEDYPYAADGLL+W AI  W E+YVA +Y    +V +D ELQ+W++E
Sbjct:  480 RINAQDGRKAYGTRAVFFLTAAGTLKPIAIELCLPPMTDGCKRAKRVFTPPADATSNWLWQLAKAHVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQMSAMHPIFKLLKPHMRYTLKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAE 712          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 3.610e-86
Identity = 145/233 (62.23%), Postives = 187/233 (80.26%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTR-SSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +IN++  RK YA+RT+FF  +AG L+P+AIELSLPP +   P+   + T  +DAT++W+W LAKAHV SNDAGVHQLVNHWL THA+MEP+I+A HR +S+MHPI+KLLHPHMRYTLEINALARQSLIN  G+IE+ F+PG  + E+S+A Y++ WRFD+E LP+DL+RRG+A ED + P GVRL+IEDYPYA DGLL+W AI+ WVESYV  +Y +  +V  D+ELQ W+ E
Sbjct:  494 RINAIDGRKAYATRTIFFLTEAGTLKPIAIELSLPPAKPGEPRPSKVLTPPYDATSNWLWMLAKAHVSSNDAGVHQLVNHWLRTHATMEPFILAAHRHMSAMHPIFKLLHPHMRYTLEINALARQSLINADGVIESCFTPGPVSGEISAAYYRNHWRFDLEGLPSDLIRRGVAVEDATQPHGVRLLIEDYPYANDGLLLWSAIRSWVESYVQLYYPDAGTVQCDLELQGWYHE 726          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.042e-86
Identity = 144/233 (61.80%), Postives = 177/233 (75.97%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            K+  L +   YASRT+FF +    LRP+AIEL+ PP  + PQ K ++T G+DAT+ W+W LAK H  S+DAG HQL++HWL THA  EPYIIA +RQLS+MHPIY+LLHPH RYT+EINA ARQSL+NGGGIIE  F PG+YA+ELSSA Y   WRFD E LPADL++RG+AEED +   GVRL I DYP+A DGL++W AIKEWV  YV H+Y +   +TSD ELQ WWSE+
Sbjct:  476 KVRELNNTTLYASRTLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTPGYDATSCWLWNLAKTHAISHDAGYHQLISHWLRTHACTEPYIIAANRQLSAMHPIYRLLHPHFRYTMEINARARQSLVNGGGIIETCFWPGKYALELSSAVYGKLWRFDQEGLPADLIKRGLAEEDKTAEHGVRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEV 708          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.372e-85
Identity = 146/233 (62.66%), Postives = 188/233 (80.69%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQ-NKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSE 698
            +IN+L  RK YA+RT+ F  + G L+P+AIELSLP   SS Q +K + T   DAT++W+W+LAKAHV SNDAGVHQLVNHWL THA +EP+I+A HRQLS+MHPI+KLL PHMRYTLEINA+ARQ+LI+  G+IE+ F+ G+Y +E+SSAAYK+ WRFDME LPADL+RRGMA  DP+ P G++L++EDYPYA DGLL+W AI+ WV +YV  +Y+  N + +D ELQAW+SE
Sbjct:  506 RINALDGRKAYATRTILFLTRLGTLKPIAIELSLPSQSSSNQKSKRVVTPPVDATSNWMWQLAKAHVGSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINAVARQTLISADGVIESCFTAGQYGLEISSAAYKNKWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSE 738          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.421e-82
Identity = 144/233 (61.80%), Postives = 176/233 (75.54%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KI SL     Y SRT+FF    G LR LAIEL+ P + S PQ + ++T   D T  W+W++AKAHV ++DAG H+L+ HWL TH ++EPYIIA +RQLS MHPIY+LLHPH RYT+ INALAR  LI+  GIIE SFSP +Y+MELSS AY   WRFDMEALPADL+RRGMAEEDP+   G+RL IEDYP+A DGLLIW AIK WV++YVA FY + +SV  D ELQA+W+E+
Sbjct:  520 KIRSLKHTTMYGSRTIFFLTDDGTLRLLAIELTRPASPSQPQWRQVFTPSTDTTKSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLHPHFRYTMRINALARSRLISAAGIIELSFSPQKYSMELSSVAYDKLWRFDMEALPADLVRRGMAEEDPTAEHGLRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEV 752          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.017e-80
Identity = 142/233 (60.94%), Postives = 176/233 (75.54%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            KI SL     Y SRTVFF    G L+ LAIEL+ P + S PQ + ++T   DAT  W+W++AKAHV ++DAG H+L+ HWL TH ++EPYIIA +RQLS MHPIY+LL PH RYT+ INA AR +LI+ GGIIE SFSP +Y+MELSS AY   WRFD EALPADL+RRGMAEEDP+   G++L IEDYP+A DGLLIW AIK WV++YVA FY + +SV  D ELQA+W+E+
Sbjct:  503 KIRSLDHTTMYGSRTVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDATMSWLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLRPHFRYTMRINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRRGMAEEDPTAEHGLKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEV 735          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.520e-76
Identity = 135/235 (57.45%), Postives = 168/235 (71.49%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDA--TTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            K+  L     Y SR +FF    G LRP+AIEL+ P ++  PQ + ++T G D   T  W+W+LAKAH+ ++DAGVHQLV+HWL THA  EPYIIA +RQLS MHP+Y+LLHPH R+T+EINA AR  LIN GGIIE SF PG Y++ELSS AY   WRFDMEALP DL+RRGMA  +P+    + L IEDYPYA DGLL+W AIK+W  +YV H+Y     +  D ELQAWW+E+
Sbjct:  507 KVRKLDGTTLYGSRALFFLTADGTLRPIAIELTRPKSKKKPQWRQVFTPGCDGSVTGSWLWQLAKAHILAHDAGVHQLVSHWLRTHACTEPYIIAANRQLSQMHPVYRLLHPHFRFTMEINAQARAMLINAGGIIEGSFVPGEYSLELSSVAYDQQWRFDMEALPEDLIRRGMAVRNPN--GELELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEV 739          
BLAST of DC900329 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.593e-76
Identity = 133/233 (57.08%), Postives = 167/233 (71.67%), Query Frame = 3
Query:    3 KINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPTRSSPQNKHIYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPNSVTSDVELQAWWSEI 701
            ++  LPD   Y SRTVFF +  G L PLAIEL+ P + + PQ K  +THG DAT  W+WKLAKAHV ++D G HQLV+HWL THA +EPYIIAT+RQLS MHP+Y+LLHPH RYT+EINALAR++LIN  GIIE +F  G+Y++ELSS AY + W+F+ EALP DL+ RG+A         + L I+DYPYA DGLLIW +IK+W   YV  +Y     V  D EL+AWW E+
Sbjct:  478 RVRELPDTTLYGSRTVFFLSDEGTLMPLAIELTRPQSPTKPQWKRAFTHGSDATESWLWKLAKAHVLTHDTGYHQLVSHWLRTHACVEPYIIATNRQLSRMHPVYRLLHPHFRYTMEINALAREALINADGIIEEAFLAGKYSIELSSVAYGAAWQFNTEALPEDLINRGLAVRRDD--GELELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEV 708          
The following BLAST results are available for this feature:
BLAST of DC900329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX6_ARATH1.609e-11081.70Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_ARATH4.264e-8763.79Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX5_ORYSJ2.116e-8663.09Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ3.610e-8662.23Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX2_ARATH8.042e-8661.80Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH1.372e-8562.66Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ2.421e-8261.80Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.017e-8060.94Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX21_HORVU1.520e-7657.45Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX23_HORVU2.593e-7657.08Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionDC900329 VSS Citrus sinensis cDNA clone VS28679 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900329 ID=DC900329; Name=DC900329; organism=Citrus sinensis; type=EST; length=826bp
AGAAAATAAACTCCTTGCCAGATAGAAAAACATATGCCTCTAGGACAGTT
TTCTTCTATAACAAGGCTGGCATGCTGAGGCCACTAGCTATAGAGCTATC
CCTTCCTCCAACACGTTCTTCGCCTCAGAATAAACACATTTACACTCATG
GNCATGATGCTACAACACATTGGATTTGGAAGCTGGCCAAAGCTCATGTC
TGTTCAAATGATGCTGGAGTCCACCAACTAGTAAATCACTGGTTGATGAC
TCATGCTTCTATGGAGCCTTATATAATTGCAACACACAGACAGCTTAGTT
CAATGCACCCCATTTATAAGTTGCTTCATCCTCACATGCGCTACACGCTA
GAAATTAATGCACTTGCACGGCAAAGTTTAATAAACGGAGGGGGTATAAT
TGAGGCTTCTTTCAGCCCAGGAAGGTATGCCATGGAGCTAAGCTCTGCAG
CCTACAAGAGTTTTTGGAGGTTTGACATGGAGGCATTGCCTGCAGATCTT
TTGCGCAGGGGTATGGCTGAGGAGGATCCTTCAATGCCTAGCGGTGTAAG
ACTTGTGATTGAAGACTACCCGTATGCAGCAGATGGGCTTCTTATCTGGT
GTGCTATAAAAGAGTGGGTAGAATCATATGTTGCACACTTCTACTCAGAA
CCAAATTCTGTCACGTCTGATGTTGAGCTCCAAGCATGGTGGAGTGAGAT
TAAGAACAAGGGCNCCATGACAAAGGGATGAGGCATGGNGGCCAACTTGA
ACCAAGAGACTGCTGGATATACATATGTCGGCTGATAGNAGAGCGCTACT
GCATCTTGGGATGCACGCCTAGACGC
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