CX043686

Overview
NameCX043686
Unique NameCX043686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043686_ssr188 microsatellite CX043686_ssr188:188..215. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3596 contig Csv1_Contig3596:1..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043686 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 2 
Query:  257 QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLM 376
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLM
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLM 44
[Close]
BLAST of CX043686 vs. ExPASy Swiss-Prot
Match: TREA_TENMO (Trehalase OS=Tenebrio molitor PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  364 KEAYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 516
            K   + +++TG M EKYNVE  G  GGGGEY+ Q+GFGW+NGVVL F+ +F
Sbjct:  502 KANLIGFRQTGEMFEKYNVEVPGQNGGGGEYVVQSGFGWTNGVVLEFINQF 552
[Close]
BLAST of CX043686 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 35/42 (83.33%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:  260 EEDKKP---NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLM 376
            EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLM
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLM 47
The following BLAST results are available for this feature:
BLAST of CX043686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SMT3_ARATH7.793e-1492.50Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
TREA_TENMO2.122e-1156.86Trehalase OS=Tenebrio molitor PE=2 SV=1[more]
SMT3_ORYSJ8.065e-1183.33Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12G09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G09-M18-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043686 ID=CX043686; Name=CX043686; organism=Citrus sinensis; type=EST; length=596bp
ATAAAACCCAATTTCGTTTTTTTATTTGTTTAATTTATTTTTTCTTTACA
AAAACGATAGCTAATTACAACTGTCGTTCACTTGCTCGAGTCTACGCTCC
CAAGGCTTTTTTAAAGGGAAAGCCCTAATCTCATCATCACAACACAAACG
AAGAGATCGAAAGAGCAAGAGATAGAGAGAAAGAGAAAGAGAGAGAGAGA
GAGAGAGAGAGAGAGACGAAGCAGAAGAGAGAATGTCAGGCGTCACGAAC
ACTCCGCAAGAGGAAGATAAGAAGCCCAACGATCAATCGGCTCACATCAA
TCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCTTCAGGATCAAAC
GAAGCACCCAACTAAAGAAGCTTATGTTGCATACAAAGAAACTGGTGCTA
TGCATGAAAAATATAATGTAGAAAAATGTGGAGATATTGGAGGTGGTGGT
GAATACATACCCCAGACTGGTTTTGGTTGGTCAAATGGAGTCGTGTTGGC
GTTCTTGGAAGAGTTTGGGTGGACAGCAGATCTGAAGATAGGTGGCAATG
GAGTTCTGCTCTGAAGAGATGAGCTTTGACTTGGGTTTATAACTAC
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