CX043685

Overview
NameCX043685
Unique NameCX043685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043685_ssr526 microsatellite CX043685_ssr526:526..553. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3596 contig Csv1_Contig3596:42..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043685 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = -1 
Query:  366 QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLM 485
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLM
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLM 44
[Close]
BLAST of CX043685 vs. ExPASy Swiss-Prot
Match: TREA_TENMO (Trehalase OS=Tenebrio molitor PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = -3 
Query:  226 KEAYVAYKETGAMHEKYNVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 378
            K   + +++TG M EKYNVE  G  GGGGEY+ Q+GFGW+NGVVL F+ +F
Sbjct:  502 KANLIGFRQTGEMFEKYNVEVPGQNGGGGEYVVQSGFGWTNGVVLEFINQF 552
The following BLAST results are available for this feature:
BLAST of CX043685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SMT3_ARATH1.066e-1392.50Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
TREA_TENMO2.903e-1156.86Trehalase OS=Tenebrio molitor PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12G09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G09-M18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043685 ID=CX043685; Name=CX043685; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTAACCATCAAATAAGAATAGTTTGCTTTCTTTTGCTAGAAAAT
GCAAAATATGAATGTACATAATATATCAAGTTCCCACGTTCAATAGAATT
GACAAGACATGAAAAAGAAGGGAGAGAATCCAAGATAATTAGGTCGGTAG
TTATAAACCAAGTCAAAGCTCATCTCTTCAGAGCAGAACTCCATTGCAAC
CTATCTTCAGATCTGCTGGCCACCCAAACTCCTCCAAGAACGCCAACACG
ACTCCATTTGACCAACCAAAACCAGTCTGGGGTATGTATTCACCACCACC
TCCAATATCTCCACATTTTTCTACATTATATTTTTCATGCATAGCACCAG
TTTCTTTGTATGCAACATAAGCTTCTTTAGTTGGGTGCTTCGTTTGATCC
TGAAGAAAACCTCATTCCCATCCTGGCCCTTGACTTTGAGATTGATGTGA
GCCGATTGATCGTTGGGCTTCTTATCTTCCTCTTGCGGAGTGTTCGTGAC
GCCTGACATTCTCTCTTCTGCTTCGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCTCTTTCTCTCTGTCTCTTGCTCTTTCGATCTCTTCGTTTGTGT
TGTGATGATGAGATTAGGGCTTTCCCTTTAAAAAAGCCTTGGGGAGCGTA
GACTCGAGCAAGTGAACGACAGTTGTAATTAGCTATGGTTTTTGGTAAGA
A
back to top