CX043684

Overview
NameCX043684
Unique NameCX043684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043684_ssr52 microsatellite CX043684_ssr52:52..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2190 contig Csv1_Contig2190:246..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043684 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   91 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPSEPRWAFCYSVLHKVSGNF 243
            MGSL A+L++P+DLYPL+KLK+A+R AEKQIP  P W FCYS+LHKVS +F
Sbjct:    1 MGSLRAILKNPEDLYPLVKLKLAARHAEKQIPPSPNWGFCYSMLHKVSRSF 51
[Close]
BLAST of CX043684 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.925e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   91 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPSEPRWAFCYSVLHKVSGNF 243
            MGSL  +LR+PDD+YPLLK+K A  +AEKQIP EP W FCYS+LHKVS +F
Sbjct:    1 MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSF 51
The following BLAST results are available for this feature:
BLAST of CX043684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FDFT_NICBE1.313e-1568.63Squalene synthetase OS=Nicotiana benthamiana PE=2 ... [more]
FDFT_ARATH2.925e-1568.63Squalene synthetase OS=Arabidopsis thaliana GN=SQS... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12G08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G08-M16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043684 ID=CX043684; Name=CX043684; organism=Citrus sinensis; type=EST; length=245bp
ATCTAGCAAAATTTAACGCCTCCTACAAATACCCTTTCGAAGATTTTATT
TTTGTTGTTGTTGCTTTCTAGGTTTACAAAAAAAAAAAAAATGGGGAGTT
TGGCAGCGGTGTTGAGGCACCCAGATGATCTTTACCCGTTATTGAAGCTG
AAAATGGCATCGAGGCAAGCTGAAAAGCAGATCCCATCTGAGCCTCGCTG
GGCTTTTTGTTACTCTGTGCTTCATAAGGTCTCCGGAAATTTCGC
back to top