CX043681

Overview
NameCX043681
Unique NameCX043681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3595 contig Csv1_Contig3595:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 3.049e-105
Identity = 189/219 (86.30%), Postives = 202/219 (92.24%), Query Frame = 3 
Query:    3 GTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVK 659
            G  LVQQAED ATNQ  ++ +VQEQVLIRK+IELHDKYM YVT CF NHTLFHKALKEAFEIFCNK V GSSS+ELLATFCDNILKKGG+EKL DEAIE+TLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL +N  A+PGIDL+VTVLTTGFWPSYKS D+NLPSEM+K
Sbjct:  312 GNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIK 530
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.443e-38
Identity = 78/197 (39.59%), Postives = 132/197 (67.01%), Query Frame = 3 
Query:   69 QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVK 659
            +++ +++++++  DK    +  CF+ +  F  A+KEAFE F NK    +  +EL+A + D+ L+  GN++  DE +E+ L+K++ +  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++Y+  NQN    I+L+V +LT G+WP+Y   +++LP EMVK
Sbjct:  493 KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP--NKPAELIAKYVDSKLR-AGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYM-QNQNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVK 685
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.701e-36
Identity = 75/197 (38.07%), Postives = 128/197 (64.97%), Query Frame = 3 
Query:   69 QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVK 659
            +++ +++ +++  DK    +  CF  +  F   +KE+FE F NK    +  +EL+A   D+ L+  GN++  DE +E TL+K++ L  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P IDL+V +LT G+WP+Y   +++L  EM+K
Sbjct:  357 KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLR-AGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYWPTYTPMEVHLTPEMIK 549
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.143e-35
Identity = 77/197 (39.09%), Postives = 128/197 (64.97%), Query Frame = 3 
Query:   69 QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVK 659
            +++ +++ +++  DK    V  CF  +  F   +KE+FE F NK    +  +EL+A   D+ L+  GN++  DE +E  L+K++ L  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++  NQ+A   IDL+V +LT G+WP+Y   +++LP EMV+
Sbjct:  357 KDKDMVQDLLDFKDKVDHVVEVCFQRNERFINLMKESFETFINKRP--NKPAELIAKHVDSKLR-AGNKEATDEELERILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHM-QNQSAPGPIDLTVNILTMGYWPTYTPMEVHLPPEMVR 549
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.493e-35
Identity = 77/190 (40.53%), Postives = 124/190 (65.26%), Query Frame = 3 
Query:   87 RKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMV 656
            + +++L DKY   + N   N   F  ++++AFE F N       S E ++ F D  LKKG  + + +E ++  L+K++ L   I +KD+F ++Y++ LA+RLL  RS +DD ER+++ KLK +CG QFTSK+EGM TD+ L+++  + F+ Y+ N + A P IDL+V VLTTGFWP+  +++ NLP E++
Sbjct:  338 QSLLDLKDKYDNLLQNALYNDKQFIHSIQQAFEYFINL---NPKSPEYISLFIDEKLKKG-LKGVSEEEVDIILDKILMLFRLIQEKDVFEKYYKQHLAKRLLLGRSISDDAERNMIAKLKTECGYQFTSKLEGMFTDMRLSQDTMSGFKTYIQNLKKALP-IDLNVHVLTTGFWPTQNTANCNLPREIL 522
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32
Identity = 79/214 (36.92%), Postives = 130/214 (60.75%), Query Frame = 3 
Query:   33 AATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLIDEA-IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEM 653
            AA  + G +     ++ ++ ++++H KY   V + F N   F  AL +A   F N       A   S S ELLA +CD++LKK  + K  +EA +E+TL +V+ +  YI DKD+F +FY K LA+RL+   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N++     +D S+ VL++G WP  +S    LPSE+
Sbjct:  350 AAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL--DLDFSIQVLSSGSWPFQQSCTFALPSEL 559
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32
Identity = 79/214 (36.92%), Postives = 130/214 (60.75%), Query Frame = 3 
Query:   33 AATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLIDEA-IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEM 653
            AA  + G +     ++ ++ ++++H KY   V + F N   F  AL +A   F N       A   S S ELLA +CD++LKK  + K  +EA +E+TL +V+ +  YI DKD+F +FY K LA+RL+   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N++     +D S+ VL++G WP  +S    LPSE+
Sbjct:  350 AAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL--DLDFSIQVLSSGSWPFQQSCTFALPSEL 559
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.442e-32
Identity = 79/214 (36.92%), Postives = 130/214 (60.75%), Query Frame = 3 
Query:   33 AATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNK------AVGGSSSSELLATFCDNILKKGGNEKLIDEA-IEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEM 653
            AA  + G +     ++ ++ ++++H KY   V + F N   F  AL +A   F N       A   S S ELLA +CD++LKK  + K  +EA +E+TL +V+ +  YI DKD+F +FY K LA+RL+   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N++     +D S+ VL++G WP  +S    LPSE+
Sbjct:  350 AAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL--DLDFSIQVLSSGSWPFQQSCTFALPSEL 559
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 72/212 (33.96%), Postives = 125/212 (58.96%), Query Frame = 3 
Query:   12 LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLP 644
            L +Q +   + +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKKG  + L ++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P
Sbjct:  321 LREQGKALVSEEGEGKNPVD---YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIP 525
[Close]
BLAST of CX043681 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 72/212 (33.96%), Postives = 125/212 (58.96%), Query Frame = 3 
Query:   12 LVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLIDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSS-DLNLP 644
            L +Q +   + +G     V     I+ +++L  ++  ++   F N  LF + +   FE F N     S S E L+ F D+ LKKG  + L ++ +E  L+K + L  ++ +KD+F  +Y++ LARRLL ++S +DD E+++++KLK +CG QFTSK+EGM  D++++      F ++L     +  G+DL+V VLTTG+WP+  ++   N+P
Sbjct:  321 LREQGKALVSEEGEGKNPVD---YIQGLLDLKSRFDRFLQESFSNDRLFKQTIAGDFEYFLNL---NSRSPEYLSLFIDDKLKKGV-KGLTEQEVESILDKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQTTGVSLGGVDLTVRVLTTGYWPTQSATPKCNIP 525
The following BLAST results are available for this feature:
BLAST of CX043681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CUL1_ARATH3.049e-10586.30Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4B_HUMAN1.443e-3839.59Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_HUMAN6.701e-3638.07Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE1.143e-3539.09Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL3_DICDI1.493e-3540.53Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL1_PONAB3.442e-3236.92Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE3.442e-3236.92Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN3.442e-3236.92Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL3_XENTR1.107e-3033.96Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3B_XENLA1.107e-3033.96Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G06-M12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043681 ID=CX043681; Name=CX043681; organism=Citrus sinensis; type=EST; length=659bp
AAGGTACTGTGTTGGTACAACAGGCTGAAGATGCTGCAACAAACCAGGGT
GGAAGTTCAGGTGCTGTGCAGGAACAGGTCCTTATCAGAAAAATAATTGA
GCTGCATGACAAGTATATGGAATACGTGACTAATTGTTTCATAAACCACA
CGTTGTTCCACAAGGCTCTGAAAGAGGCTTTTGAGATATTTTGCAATAAA
GCTGTTGGTGGCAGTTCGAGTTCAGAACTGCTGGCAACTTTTTGTGATAA
TATCCTAAAGAAGGGTGGAAATGAGAAACTGATTGATGAAGCCATTGAAG
AAACTCTGGAGAAGGTTGTTAAGCTGCTTGCATATATCAGTGATAAAGAT
CTTTTTGCCGAATTCTACAGGAAGAAGCTTGCTCGTCGGCTGCTTTTTGA
TCGTAGTGCTAATGATGATCATGAAAGGAGTATTCTCACAAAGCTGAAGC
AGCAGTGTGGTGGACAGTTTACATCGAAGATGGAGGGAATGGTTACAGAT
TTGACTTTGGCAAGAGAAAATCAGACCAGCTTTGAGGAATATCTCAGCAA
TAACCAGAATGCACACCCTGGAATAGATTTATCAGTTACTGTTCTCACTA
CTGGATTTTGGCCAAGTTATAAATCCTCCGATCTGAACCTTCCTTCTGAG
ATGGTTAAA
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