CX043680

Overview
NameCX043680
Unique NameCX043680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3594 contig Csv1_Contig3594:1..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.494e-56
Identity = 108/225 (48.00%), Postives = 152/225 (67.56%), Query Frame = 3
Query:   66 MGSNPAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYXNSFTIGSSHLVDPLT 734
            M   P  +SDIGK+A+DLL +DY   HKFT++  S+TG+ ++A+GLKK E+F+ D+++  K+ N T DVKVDT SNV T +T+ +  P  K   SF +PD KSGK++LQYLH +A I++SIGL  +PL+  S   G+  + LG ++ FDTA+ +F K  AG+  +  D  A+L L DKG  + ASY H V P   T+V AE+TH FS+  N+ TIG+ HL+DPLT
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLT 225          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 5.142e-54
Identity = 101/225 (44.89%), Postives = 147/225 (65.33%), Query Frame = 3
Query:   66 MGSNPAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYXNSFTIGSSHLVDPLT 734
            M   P  ++DIGK+A+DLL KDY    KFT+S  S TG+ ++++G KK E+F+GD+N+  K+ N T D+KVDT SN+ T +T+ +  P  KA LSF++P+  SGK++LQYLH +A I SS+GL   P++  S+ IG+  L  G ++ FDT      K  A +   K D   +L L +KG  L ASY HA++P   T+V  +++HRFST  N+FT+G+ H +DPLT
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLT 225          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.954e-53
Identity = 101/225 (44.89%), Postives = 146/225 (64.89%), Query Frame = 3
Query:   66 MGSNPAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTS--VAAEMTHRFSTYXNSFTIGSSHLVDPLT 734
            MG  P  +++IGK+A+DLL KDY   HKF+++  S TG+ ++++G KK ++F+ D+N+  K+ N T D+KVDT SN+ T +T+ +  P  K  LSFR+PD +SGKL++QYLH +A I +S+GL   P++  S  +G+  + LG +V FDT +  F K  AG+     D  A+L L +KG  L ASY H V P TS  V AE+ H FST  N  T+G+ H +DPLT
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLT 225          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.829e-51
Identity = 100/221 (45.25%), Postives = 147/221 (66.52%), Query Frame = 3
Query:   78 PAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVD-PFTSVAAEMTHRFSTYXNSFTIGSSHLVDPLTL 737
            P  + +IGK+A+DLL +DY   HKFTL+  +S G+ ++AT  KK ++  G+I S  K+ N TVDVK ++ SNV T VT+ ++ P  K+ LSF +PD +SGK +LQY H +A + +SIGL  +P++ LS+  G+K L +G +V  DTA+ +  KY AG+  +  D  A+L L +KG +L ASY H V+   T+V AE+TH FS+  NS T G+ H +DPLT+
Sbjct:    4 PGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTV 224          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.076e-51
Identity = 104/222 (46.85%), Postives = 144/222 (64.86%), Query Frame = 3
Query:   78 PAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDIL-PSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF-TSVAAEMTHRFSTYXNSFTIGSSHLVDPLTL 737
            P  +S IGK+AKDLL +DY   HKFTL+  ++ G  ++AT  KK ++ +G+I S  K+ N TVDVK ++ SNV T +T  D+  P  K  LSF +PD KSGK++LQYLH +A I++SIGL   P++ LS   G+  L +G +V  DTA+ +F KY A +     D  A+L L +KG +L ASY H V+   T+V AE+TH FS+  NS T G+ H +DPLTL
Sbjct:    4 PGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTL 225          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 2.236e-49
Identity = 92/223 (41.26%), Postives = 141/223 (63.23%), Query Frame = 3
Query:   66 MGSNPAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYXNSFTIGSSHLVDPLT 734
            M   P  +++IGK+A+DLL +DY    KF+++  SSTG+ ++ TG  K  +F+GD+ +  K+ N T DVKV T S++ T +T  +  P  K  +  ++PDHKSGK ++QY H +A I +S+G   TP++  S  +G+  L LG +V ++T S +F  + AG    K D +A+L+L DKG+ L ASY   V P T V AE++H F+T  N+ T+G+ H +DPLT
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLT 223          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.558e-45
Identity = 90/225 (40.00%), Postives = 139/225 (61.78%), Query Frame = 3
Query:   66 MGSNPAPFSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYXNSFTIGSSHLVDPLT 734
            M   P  +++IGK+A+DLL KD++   KF+++  S  G+ +++TG KK ++ +GD+    +  N T D+KV T S      T+ +  P  ++  SF++PD  SGK++LQYLH +A I +S+GL   P +  S  IGS  L +G +V FDT S +F K  AG+   K D  A+L + DKG  L ASY H V+P   T+V AE++H+ S+  ++ T+G+ H +DPLT
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLT 225          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.097e-43
Identity = 88/219 (40.18%), Postives = 137/219 (62.56%), Query Frame = 3
Query:   87 FSDIGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTVDVKVDTYSNVSTKVTMVDI-LPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPF--TSVAAEMTHRFSTYXNSFTIGSSHLVDPLT 734
            ++DIGK+ +DLL KDY+   KF L+  S  G+ ++A G +K+E   G++++  K+   TVDVK ++ S++ T +T+ +   P  K+ ++  +PD +SGKL+ QYLH +A +++S+GLN  P++ LS   GSK L +G +V FDTA++ F KY A + L  PD  A+L L + G  L ASY H V     T+V AE++H  S   ++   GS H +DP T
Sbjct:    8 YTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHT 226          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 58/226 (25.66%), Postives = 100/226 (44.25%), Query Frame = 3
Query:   78 PAPFSDIGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVY--KSGNTTVDVKVDTYSNVSTKVTMVD-ILPSTKAALSFRI---PDHKSGKLDLQYLHPHAAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYXNSFTIGSSHLVD 725
            P  +SD+GK+A+D+ +K Y+FG  K  L   +S+G+  +  G    E     G + + Y  K    T+  K +T + + T+V + D +L   K +L         +K+GK  + Y H +   DS + ++   PL+  SA +G +  + G +  FDT  +        +G    DF     + D GQ    S          V  +++    T    F IG+ + +D
Sbjct:    3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLD 227          
BLAST of CX043680 vs. ExPASy Swiss-Prot
Match: VDAC_NEUCR (Mitochondrial outer membrane protein porin OS=Neurospora crassa GN=B7H23.070 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 60/226 (26.55%), Postives = 97/226 (42.92%), Query Frame = 3
Query:   87 FSDIGKRAKDLLNKDYDFGHKFTLSVPSST--GLGLSATGLKK-DEIFIGDINSVY--KSGNTTVDVKVDTYSNVSTKVTMVDILPS---TKAALSFRIPDHKSG-KLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYXN-SFTIGSSHLVDPLT 734
            FSDI K A DLLNKD+      T+ V S+T   +    TG    D++  G +   +  K    TV    +T + + TKV M D L      +   SF    +  G K +L +   +    +   L   P   + A +G +  + G   G+D   A+   Y+A +G + P +SAA+   D      ASY H V+      ++ T    T       + + + +DP++
Sbjct:    6 FSDIAKSANDLLNKDFYHLAAGTIEVKSNTPNNVAFKVTGKSTHDKVTSGALEGKFTDKPNGLTVTQTWNTANALETKVEMADNLAKGLKAEGIFSFLPATNARGAKFNLHFKQSNFHGRAFFDLLKGPTANIDAIVGHEGFLAGASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKVNSQVEAGSKATWNSKTGNTVGLEVATKYRIDPVS 231          
The following BLAST results are available for this feature:
BLAST of CX043680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VDAC2_SOLTU5.494e-5648.00Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA5.142e-5444.89Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_SOLTU1.954e-5344.89Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ORYSJ1.829e-5145.25Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT9.076e-5146.85Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH2.236e-4941.26Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH2.558e-4540.00Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC_MAIZE9.097e-4340.18Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_DROME5.751e-1325.66Voltage-dependent anion-selective channel OS=Droso... [more]
VDAC_NEUCR9.810e-1326.55Mitochondrial outer membrane protein porin OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12G04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G04-M8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043680 ID=CX043680; Name=CX043680; organism=Citrus sinensis; type=EST; length=738bp
CTGAAGCGGTCCGAACAGCCGCTTTTCTCCATTATTACAGTGTATTTTAT
CGTTTCTGAGAAGAGATGGGGAGCAATCCGGCACCGTTTTCTGATATTGG
CAAGAGAGCCAAAGACCTCTTGAACAAAGATTACGATTTTGGGCACAAGT
TTACTCTGTCGGTGCCAAGCTCCACTGGCCTGGGACTTTCAGCAACAGGT
CTGAAGAAGGATGAAATTTTTATTGGTGACATAAATAGTGTGTACAAGAG
TGGAAATACTACTGTGGATGTGAAAGTTGATACTTATTCTAATGTATCTA
CAAAAGTAACTATGGTTGATATCTTGCCATCTACCAAAGCAGCTCTGAGC
TTCAGAATACCAGATCACAAGTCTGGCAAGTTGGATCTCCAGTACCTTCA
TCCCCATGCTGCCATTGATTCCAGTATTGGCCTTAATCCAACCCCACTTT
TGGAGCTATCAGCAACAATTGGAAGTAAAGAGCTTGTTTTAGGTGGTGAA
GTTGGATTTGATACAGCTTCTGCTTCATTCATTAAGTACACTGCTGGGAT
TGGCTTGAACAAGCCAGATTTCTCTGCTGCCCTCTTACTGGCGGATAAGG
GACAGGCACTCAAGGCATCATACATTCATGCTGTGGATCCATTCACTTCA
GTTGCCGCTGAAATGACTCATAGATTTTCTACGTATCANAACAGTTTCAC
CATTGGAAGCTCACATCTCGTAGATCCATTGACATTGG
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