CX043675

Overview
NameCX043675
Unique NameCX043675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043675_ssr530 microsatellite CX043675_ssr530:530..541. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX043675 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.193e-71
Identity = 150/222 (67.57%), Postives = 163/222 (73.42%), Query Frame = -3
Query:  190 QPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXKNARMRSGSNSWYPSDYSNSEIDRIYAL 855
            QPRDELR TVTQIK DVH QLEQT+RTNKNVHNISKELRKLHREGI                                     V RASFKIFFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVVGR++EWAA LVTVVGG+IMAGVLGTMTYY              K+AR RSGSNSW+ SD+SNSE+D I+A+
Sbjct:  370 QPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDFSNSEVDPIFAI 590          
BLAST of CX043675 vs. ExPASy Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.927e-29
Identity = 81/226 (35.84%), Postives = 117/226 (51.77%), Query Frame = -3
Query:  190 LRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVR----RASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXKNARMRSGSNSW----YPSDYSN-SEIDRIYAL 840
            L++ V+ IK +V +QL Q  +TN+ V  I+KELRKLHRE +                                           R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  CT  AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+              +  R  S S SW    + SD+ + S+ ++I AL
Sbjct:  307 LKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532          
BLAST of CX043675 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.898e-26
Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = -3
Query:  316 ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREG----------IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYY 843
            +L++TV++I  +VHTQLEQT RT + +  I+K + K+H EG          +                                       R  F IF +F++ ALF SLAVVVVQ ++V  E +A+K+++ +INKLMW+A +  SVAF++ S++VVG + +  A+ VT +G LIM   LGTM Y+
Sbjct:  305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYW 490          
The following BLAST results are available for this feature:
BLAST of CX043675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y3236_ARATH1.193e-7167.57Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
Y2168_ARATH1.927e-2935.84Ankyrin repeat-containing protein At2g01680 OS=Ara... [more]
Y5262_ARATH9.898e-2636.02Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12G02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G02-M4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043675 ID=CX043675; Name=CX043675; organism=Citrus sinensis; type=EST; length=857bp
TCATTCTCCTTTTTCCGGCTAACATAATGTGCTTAGAGATTAGACAAAAA
GCACGCCGCGAAAGTGATCGCATCAAAAGTATCCAGCTGTATTAGGCAGG
GATGCCTGAATACTTCTTTACATACTTGTTCAGGATACAATTTTCTAAGT
CTCTACAATCGGAATAATGTTGCAGACACACTCACATCAAAGGGCATAAA
TTCGATCAATTTCTGAATTGGAGTAGTCAGAGGGATACCATGAGTTGGAT
CCACTCCTCATCCTTGCATTCTTCTCCCTCTTCCTAATTGATCGAACCCT
CTTAGACTTCACCACATAATAAGTCATGGTGCCGAGGACTCCAGCCATTA
TCAGTCCCCCAACAACTGTAACCAAAATTGCAGCCCACTCGTGTCTGCGG
CCAACCACTATGTAAGAGGAGGCAATAAATGCCACGGAGGTGCACACCGA
AGCTAACCACATCAACTTGTTAATAACCTCCACCACCCGTTTCTCTGCTT
TTGTCTCACCTCTGACCAGAGTGATTTGGACAACAACAACAGCTAAAGAT
GTAAAGAGTGCTATTGCATTAAAAATGAAGAAGATTTTGAAAGAGGCACG
ACGGACGACTACAGCCACCCCGTGATCATCATCCCCGCCAGGCACAGTAA
ATATAGCTGCAAAAGCAACCGTGGCAAATAGTACAGCCACCACAGTCACT
GAATTGGTGGCATTGTTGATGCCTTCGCGATGGAGTTTCCTGAGCTCTTT
AGAAATGTTATGAACATTTTTGTTCGTTCTTCTGGTTTGTTCAAGCTGTG
TATGAACATCTTTCTTGATTTGAGTCACGGTTTTTCTCAACTCATCCCTT
GGCTGGT
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