DC900320

Overview
NameDC900320
Unique NameDC900320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig151 contig Csv1_Contig151:309..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.200e-88
Identity = 151/192 (78.65%), Postives = 174/192 (90.62%), Query Frame = -3
Query:  140 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 715
            FHMD+IAG ANMRARNY IPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK L GGHK+EDYRNTFANLA+PLFS+AEPVPPK  KHQ++SWTVWDRW +  N TLR+LL+WL++KGLNAYSIS G+ LL+NSMFPRHKER+D+KVVD+ R+VAK E+P YR+H DVVVAC D+DDND+DIP +S+YF
Sbjct:  859 FHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYF 1050          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.200e-88
Identity = 151/192 (78.65%), Postives = 174/192 (90.62%), Query Frame = -3
Query:  140 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 715
            FHMD+IAG ANMRARNY IPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK L GGHK+EDYRNTFANLA+PLFS+AEPVPPK  KHQ++SWTVWDRW +  N TLR+LL+WL++KGLNAYSIS G+ LL+NSMFPRHKER+D+KVVD+ R+VAK E+P YR+H DVVVAC D+DDND+DIP +S+YF
Sbjct:  859 FHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYF 1050          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.163e-83
Identity = 145/192 (75.52%), Postives = 168/192 (87.50%), Query Frame = -3
Query:  140 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDKGLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 715
            FHMDLI+GLANMRARNY IPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKV+ G H +EDYRNTFANLALPLFSMAEPVPPKV KH++ SWTVWDRW ++ N TL +LLQW  DKGL AYSIS G+ LL+N+MF RHK+R+ KKVVD+ R+VAK ++P YR+H D+ VAC DED+ND+DIP +S+YF
Sbjct:  861 FHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFANLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYF 1052          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_CANAL (Ubiquitin-activating enzyme E1 1 (Fragment) OS=Candida albicans GN=UBA1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.488e-38
Identity = 82/193 (42.49%), Postives = 124/193 (64.25%), Query Frame = -3
Query:  146 HMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISI 712
            H++ I   +N RA NYGI   D  K KFIAG+IIPAIAT+TA+ TGLVCLELYKV+DG   +E Y+N F NLALP    +EP+     K+ +  +  +WDR+ L  + TL++LL   + ++GL    +SYG  LL+ S FP  + K+R+  K+  L+++V+K E+P + ++    + C DE+  D+++P I +
Sbjct:   11 HIEFITAASNCRALNYGIEIADAHKTKFIAGKIIPAIATTTALVTGLVCLELYKVVDGKDDIEQYKNGFINLALPFIGFSEPIKSPEGKYNNKKFDQIWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNLIFEICCDDEEGEDVEVPYICV 203          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.665e-37
Identity = 79/197 (40.10%), Postives = 124/197 (62.94%), Query Frame = -3
Query:  152 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 715
            FHMD I   +N+RA NYGI   D+ K+K IAG+IIPAIAT+T+   GLVCLELYKV+ G  +LE Y+N+F NLALPLFS + P+ P+  ++ D  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +     + C  +  +DI++P +
Sbjct:  857 FHMDFIVAASNLRAENYGISPADRHKSKLIAGKIIPAIATTTSAIVGLVCLELYKVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQYYDQEWTLWDRFDVQGLQPSGEEMTLKQFLDYFKTEHKLEVIMLSQGVSMLYSVFMPASKLKERLDQPMTEIVSCVSKQKLGHHVKSLVFELCCNSDSGDDIEVPYV 1053          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.454e-36
Identity = 78/193 (40.41%), Postives = 124/193 (64.25%), Query Frame = -3
Query:  146 HMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFPRHK--ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISI 712
            H+D I   +N+RA NY I   D+ K KF+AG+I+PA+ TSTA+ +GLVCLEL K++DG  K+E+Y+N F NLA+ LF+ ++P+  PK+  +      +WDR+ L D  TL++L+ + Q ++GL    +S G  LL+ +  P  K  ER+  K+ +LV  + K +L P+R+H  + + C D +  D+++P I I
Sbjct:  819 HIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLPD-CTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFICI 1010          

HSP 2 Score: 22.7126 bits (47), Expect = 5.454e-36
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = -2
Query:  717 R*TQSQFEKDDDXN 758
            R T ++FEKDDD N
Sbjct:  804 RLTPAEFEKDDDSN 817          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 9.028e-36
Identity = 77/197 (39.09%), Postives = 121/197 (61.42%), Query Frame = -3
Query:  152 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 715
            FHMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  857 FHMDFIVAASNLRAENYDIPSADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.011e-35
Identity = 77/197 (39.09%), Postives = 120/197 (60.91%), Query Frame = -3
Query:  152 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 715
            FHMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G   L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  857 FHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRHLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.011e-35
Identity = 77/197 (39.09%), Postives = 120/197 (60.91%), Query Frame = -3
Query:  152 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 715
            FHMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L  Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  857 FHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLNSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
BLAST of DC900320 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.981e-35
Identity = 76/197 (38.58%), Postives = 120/197 (60.91%), Query Frame = -3
Query:  152 FHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILR------DNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 715
            FHMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL+Q L + + +  L    +S G  +L++   P  + KER+D+ + ++V  V+K +L  + +   + + C DE   D+++P +
Sbjct:  857 FHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYV 1053          
The following BLAST results are available for this feature:
BLAST of DC900320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBE12_WHEAT1.200e-8878.65Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT1.200e-8878.65Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT1.163e-8375.52Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_CANAL1.488e-3842.49Ubiquitin-activating enzyme E1 1 (Fragment) OS=Can... [more]
UBA1Y_MOUSE3.665e-3740.10Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_SCHPO5.454e-3640.41Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1_HUMAN9.028e-3639.09Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RABIT2.011e-3539.09Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_BOVIN2.011e-3539.09Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_RAT9.981e-3538.58Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionDC900320 VSS Citrus sinensis cDNA clone VS28669 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900320 ID=DC900320; Name=DC900320; organism=Citrus sinensis; type=EST; length=780bp
GAATAAGCTACTGATTGATAGGAGAATATTTAGTCACCATAACAAATCCA
GTACATCTGCTCATGTTCACAAAGCATATCATTCATTTTTCATCCTACCA
ATAAATGTCAACTAATTAACTAGACGGAAACACCTAACTAAAGTAAATTG
AGATTTGAGGAATATCAATATCATTGTCATCTTCATCCACGCATGCGACT
ACCACATCAAAATGTTGTCGATATGGAGGCAGTTCTGCCTTGGCCACATC
CCTAACCAGATCCACCACCTTCTTGTCCATCCTTTCTTTGTGCCTCGGAA
ACATGCTGTTAAAAAGCAAGCAACTCCCATAGGAGATGCTGTAAGCATTC
AAGCCCTTGTCCTGCAACCACTGAAGAAGTTGTCTTAGTGTAGGGTTGTC
CCGCAAAATCCACCGGTCCCACACAGTCCAGCTCATATCCTGATGCTTGA
ACACCTTAGGTGGAACTGGCTCAGCCATCGAGAACAGAGGGAGGGCCAGA
TTGGCAAAGGTATTTCGGTAGTCTTCCAGTTTGTGCCCACCATCTAGAAC
CTTATAAAGCTCCAAGCACACAAGACCAGTTGCCATGGCAGTAGAGGTTG
CGATTGCTGGGATAATCCTCCCTGCAATGAACTTGGCCTTGAGCTTGTCA
ACTTCAGGGATGCCATAGTTCCTTGCCCTCATGTTTGCAAGGCCAGCTAT
TAAGTCCATGTGGAAGGTTTGNATCATCATCCTTTTCAAACTGGGATTGG
GTTCATCTTGGAACCTGGTTGGCAGCTGCT
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