CX043670

Overview
NameCX043670
Unique NameCX043670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11317 contig Csv1_Contig11317:368..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.518e-43
Identity = 98/266 (36.84%), Postives = 153/266 (57.52%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHN-FVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKE--KCGTSALTFESVKSLELVQSVV 791
            +LD KSF  LFD++ VEKK++  G +MPS + TGG R+ +YLD SEPKH +LK      LK S      E  ++   LFD++EKELS K    +        FNFL+++  G +P AD ++  +   ++ KW+   + P +SI + + +EE  +H+F+ P ALV  DY +L+  F+E  G+ +V+   D+ G+++EEA HNLLF   FN +GG  I  P ++  I      +  +L  E++   K     LT  +++ +EL +SVV
Sbjct:  116 LLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNP-ADTKLKADAPGLITKWVLFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVE--ADKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVV 378          
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.337e-42
Identity = 92/266 (34.59%), Postives = 149/266 (56.02%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVK---EKCGTSALTFESVKSLELVQSVV 791
            +LD KSF  LFDM  VEKK++  G +MPS + TGG R+ +YLD SEP H +LK    + +K      + E  SS   L + VE +L+ K   ++  P ++  FNFLS++  G  P  D  + ++  S++ KW+   + P +S+ + + +EE  LHS   P  LV  DY++L+ F       V+    ++ G++++EA HN+LF + FN++GGF I  P L+  I      L  KL  E++   +  G   +T  +++ + L++SVV
Sbjct:  134 LLDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKP-IDTPLGKDAPSLISKWVLFNLAPILSVGLPKEVEEATLHSVRLPPLLVQNDYHRLYEFFTSAAGSVLDEA-EQSGISRDEACHNILFAVCFNSWGGFKILFPSLMKWIGRAGLELHTKLAQEIRSAIQSTGGGKVTMAAMEQMPLMKSVV 397          
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.634e-40
Identity = 87/266 (32.71%), Postives = 151/266 (56.77%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVK---EKCGTSALTFESVKSLELVQSVV 791
            +LD KSF  LFD+  VEKK++  G +MPS K TGG RV +YLD SEP+HAQLK      LK SS   + +  ++   LF+ +E EL++    ++    ++  F FL ++   ++P+ + ++  +  +++  W+   + PT+ + +   L+E  LH+F  P  L+   YNKL+++ +     V+++  ++ G+ K+EA+HN+LF + FN FGG  I  P  +  I      L  +L  E++   +  G   +T E+++ + L +SVV
Sbjct:   71 LLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPE-ETKLGTSAPTLISSWVLFNLAPTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQA-EKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVV 334          
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 7.590e-38
Identity = 87/266 (32.71%), Postives = 140/266 (52.63%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCV-FNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKEKCGTSA--LTFESVKSLELVQSVV 791
            +LD KSF  LFD+  VEK+++  G FMPS   TGG RV AYLD SEP HA++K   +  L      +V    S+   L DTVE +L+     S    L     F F+ ++  G  P A + +   G +    WL  Q+ P  ++ +   +E+  LH+   P  L+S DY  L+ +      + +   +   GL++EEA HNLLF   FN++GGF + +P++++ +A     L  +L +E++     +   +T  +++ +EL +SVV
Sbjct:   71 LLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSASSSLGTGGPTKAALWLLWQLAPLTTLGLPMIIEDPLLHTLPLPPFLISSDYKALYAYFAAAASQALDAAEG-LGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLAAEIRSAVADAGGNVTLAALEKMELTRSVV 335          
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.295e-37
Identity = 89/265 (33.58%), Postives = 139/265 (52.45%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVK--EKCGTSALTFESVKSLELVQSVV 791
            +LD  SF  LFD  +V+K ++  G FMPS   TGG RV +YLD SEP HA LK      L    +  + +       LF  +E +L+      + V      F FL + ++G DP A + +  +G  ++ KW+  Q+ P +S+ +   +E+  LHS   P ALV  DY++L +F     K VV  G +  G+ +EEA+HN+LF L FN+FGG  I  P L+  +      +  +L +EV+   +     +T +++  + LV+S V
Sbjct:  110 LLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARVGKADFGVHNDAAAFGFLCQGLLGRDP-AKSALGRDGPKLITKWVLFQLSPLLSLGLPTLVEDTLLHSLRLPPALVKKDYDRLADFFRDAAKAVVDEG-ERLGIAREEAVHNILFALCFNSFGGMKILFPTLVKWLGRAGARVHGRLATEVRGAVRDNGGEVTMKALAEMPLVKSAV 372          
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.196e-28
Identity = 81/268 (30.22%), Postives = 136/268 (50.75%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEF-GLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVK--EKCGTSALTFESV-KSLELVQSVV 791
            +LD +SF  L D  +V+K + L G FMPS+   GG R  A+LD ++P+HA++K   M               ++   +FD V+  L     + +     + + +F   ++ G  P + A + +   +   KWL  Q+ P  S  +   PLE++ LH+F  P  LV  +Y ++  +       ++   +    G+ ++E +HNL+F+  FNA+GGF IF+P ++  +A     L AKL SEV+     G   +T  +V K + LV+SVV
Sbjct:   92 LLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDEVDAGLVAGGPVEFNKLNMRYMLDFTCAALFGGAPPSKA-MGDAAVTKAVKWLIFQLHPLASKVVKPWPLEDLLLHTFRLPPFLVRREYGEITAYFAAAAAAILDDAEKNHPGIPRDELLHNLVFVAVFNAYGGFKIFLPHIVKWLARAGPELHAKLASEVRAAAPAGGGEITISAVEKEMPLVKSVV 358          
BLAST of CX043670 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27
Identity = 81/268 (30.22%), Postives = 134/268 (50.00%), Query Frame = 3
Query:    3 VLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQ-DEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINAIASDTTGLQAKLRSEVKEKCGT---SALTFESVKSLELVQSVV 791
            +LD +SF  L D  +V+K + L G +MPS    GG R  A+LD ++P+HA++K   M               ++   +FD VE  L    ++ +     + + +F   ++ G +P +   + +   +    WLA Q+ P  S  +   PLEE+ LH+F+ P  LV   Y  L  +       V+   +    G+ ++E + NL+F+  FNAFGGF IF+P ++  +A     L AKL +EV+    T     +T  +V+ + LV+SVV
Sbjct:   92 LLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVEAGLGA--AVEFNKLNMRYMLDFTCAALFGGEPPSKV-VGDGAVTKAMAWLAFQLHPIASKVVKPWPLEELLLHTFSLPPFLVRRGYADLKAYFADAAAAVLDDAEKSHTGIPRDELLDNLVFVAIFNAFGGFKIFLPHIVKWLARAGPELHAKLATEVRATVPTGEDDGITLAAVERMPLVKSVV 356          
The following BLAST results are available for this feature:
BLAST of CX043670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74A_ARATH3.518e-4336.84Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
CP74_LINUS1.337e-4234.59Allene oxide synthase, chloroplastic OS=Linum usit... [more]
C74A2_PARAR1.634e-4032.71Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A2_ORYSJ7.590e-3832.71Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A1_ORYSJ1.295e-3733.58Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A4_ORYSJ3.196e-2830.22Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ6.028e-2730.22Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12F11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F11-K22-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043670 ID=CX043670; Name=CX043670; organism=Citrus sinensis; type=EST; length=792bp
CTGTTCTTGACTGCAAATCTTTTGCTCATCTCTTTGATATGGAGATTGTG
GAGAAGAAAAATATTCTTGTTGGTGATTTCATGCCCAGTGTTAAGTTTAC
AGGAGGCTTGAGGGTTAGTGCTTATCTTGATACTTCTGAGCCTAAACATG
CCCAGCTCAAAGGCTTCGCCATGGACACTCTGAAAAGAAGCTCAAAATTA
TGGGTATCAGAAGTGGTATCAAGTCTGGACACACTGTTCGACACCGTCGA
GAAAGAGCTCTCCGAAAAGAACAGCATAAGCTACATGGTCCCTTTACAAA
AATGCGTCTTTAACTTCCTCTCAAAATCGATCGTGGGAGCCGACCCAAAA
GCCGACGCCGAAATCGCCGAGAACGGCTTCTCCATGCTCGACAAGTGGCT
GGCCTTGCAGATCCTGCCCACAGTCAGCATAAACATCTTGCAGCCCCTTG
AAGAGATCTTTCTTCACTCTTTTGCTTACCCTTTTGCCCTTGTCAGTGGA
GACTACAACAAGCTCCACAACTTCGTTGAAAAGGAAGGCAAAGAAGTTGT
GCAGCGGGGGCAGGACGAGTTTGGGCTAACAAAAGAAGAGGCCATTCACA
ACTTGCTGTTCATTCTAGGGTTTAATGCTTTCGGTGGGTTCTCTATTTTT
GTGCCAAAGCTGATTAATGCAATTGCTAGTGACACAACTGGGTTGCAGGC
AAAGTTAAGAAGTGAAGTGAAAGAGAAATGTGGGACATCCGCCTTGACTT
TTGAGTCAGTCAAGAGTCTAGAGTTGGTTCAGTCTGTGGTTT
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