DC900319

Overview
NameDC900319
Unique NameDC900319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.022e-92
Identity = 157/210 (74.76%), Postives = 187/210 (89.05%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKL-ADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELL 627
            KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP EVNA+L++PT Y SA + AGDAQARD L+RV+ECLD+++CETFQD ITWARL+FEDYF++RVKQLTFTFPE++ TS+G PFWSAPKRFPRP++FS  D S L F++AA+ILRAET+GIPIP+W K+P KL A+AV+KVIVPDFQPK+ VKI T EKATS+S+ S+DDA VI EL+
Sbjct:  621 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTEVNAFLSNPTTYISAARTAGDAQARDQLERVIECLDRDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEFSSSDQSQLSFILAAAILRAETFGIPIPEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTHEKATSLSSASVDDAAVIEELI 830          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 8.566e-92
Identity = 157/210 (74.76%), Postives = 187/210 (89.05%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKL-ADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELL 627
            KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP EVNA+L++PT Y SA + AGDAQARD L+RV+ECLD+++CETFQD ITWARL+FEDYF++RVKQLTFTFPE++ TS+G PFWSAPKRFPRP++FS  D S L F++AA+ILRAET+GIPI +W K+P KL A+AV+KVIVPDFQPK+ VKI TDEKATS+S+ S+DDA VI EL+
Sbjct:  621 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTEVNAFLSNPTTYISAARTAGDAQARDQLERVIECLDRDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEFSSSDPSQLSFILAAAILRAETFGIPISEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTDEKATSLSSASVDDAAVIEELI 830          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 5.746e-88
Identity = 148/209 (70.81%), Postives = 179/209 (85.65%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELL 627
            KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP EVN++L++P +YA+AM+ AGDAQAR+ L+RV ECL+K+RC TF DCI+WARL+FEDYF++RVKQLTFTFPE+A TS G PFWSAPKRFPR LQFS  D SHL F+M+ASILRAE++G+ IP+W K   KLAD VNK+ VP F+PK+ V I TDEKA+++S+ S+DD  VI +LL
Sbjct:  624 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPNEVNSFLSNPAQYAAAMRKAGDAQARELLERVSECLNKDRCSTFDDCISWARLKFEDYFSNRVKQLTFTFPEDAATSMGAPFWSAPKRFPRALQFSAADQSHLNFIMSASILRAESFGVAIPEWAKDTSKLADVVNKIAVPTFEPKQGVNIVTDEKASNLSSTSVDDVAVIEDLL 832          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.448e-38
Identity = 84/198 (42.42%), Postives = 121/198 (61.11%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGS 594
            K  P+CT+H+FP+ I+H + WAR  FEGL +     VN+YLT+P  Y  ++K        + L  +   L  +R   F  CI WARL+FE+YF + ++QL + FP++  T+ GTPFWS PKR P PL+F V++  HL+F++AA+ LRA  YGI     ++   K A     VIVPDF PK+ VKI+T E   + S+ +
Sbjct:  587 KGIPVCTLHNFPNAIEHTIQWARDTFEGLFKNNADNVNSYLTNPA-YVQSLKTQNPFVRLETLASIKASL-MDRPLDFNQCIAWARLKFEEYFNNNIEQLLYNFPKDMVTTTGTPFWSGPKRAPTPLKFDVENPLHLEFIVAAANLRAFNYGIKAETNIEVIQKQA---ANVIVPDFTPKK-VKIQTSENEPAPSSNT 778          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.029e-37
Identity = 78/211 (36.97%), Postives = 119/211 (56.40%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSP--VKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELL 627
            K  P+CT+ SFP+ IDH + WA+S F+G    +   VN YLT P      +K +GD +    L+ + + L  +    F+DCI WARL FE  F   +KQL F FP++A TSNG PFWS  KR P PL+F + +  H  F++A + LRA  YGI   D    P   +    ++ +I+P+F P  N+KI+ ++     +  + + +  I++L+
Sbjct:  595 KSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGV--LESISDSLSSKP-HNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLV 802          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.754e-36
Identity = 78/202 (38.61%), Postives = 117/202 (57.92%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 606
            K  P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT P      ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   +++ ++QL   FP +  TS+G PFWS PKR P PL F V++  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  627 KSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNPLHLDYVMAAANLFAQTYGL---TGSQDRAAVATFLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 77/202 (38.12%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 606
            K  P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT P      ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   +++ ++QL   FP +  TS+G PFWS PKR P PL F V +  HL +++AA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  627 KSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVSNPLHLDYVIAAANLFAQTYGL---TGSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 606
            K  P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT        ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   + + ++QL   FP +  TS+G PFWS PKR P PL F V++  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  627 KSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 606
            K  P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT        ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   + + ++QL   FP +  TS+G PFWS PKR P PL F V++  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  627 KSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of DC900319 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.308e-35
Identity = 76/202 (37.62%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 KQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 606
            K  P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT P      ++ AG  Q  + L+ V   L  +  +++ DC+TWA   +   +++ ++QL   FP +  TS+G PFWS PKR P PL F V +  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  627 KSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAG-TQPLEVLEAVQRSLVLQLPQSWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVSNPLHLDYVMAAANLFAQTYGLA---GSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
The following BLAST results are available for this feature:
BLAST of DC900319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBE11_WHEAT5.022e-9274.76Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE12_WHEAT8.566e-9274.76Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE13_WHEAT5.746e-8870.81Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_DICDI2.448e-3842.42Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA1_YEAST6.029e-3736.97Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1_HUMAN1.754e-3638.61Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_BOVIN5.104e-3638.12Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_RAT8.706e-3638.12Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE8.706e-3638.12Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_RABIT3.308e-3537.62Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionDC900319 VSS Citrus sinensis cDNA clone VS28669 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900319 ID=DC900319; Name=DC900319; organism=Citrus sinensis; type=EST; length=652bp
AAACAAGCTCCCATGTGCACAGTTCATTCATTCCCACACAACATTGATCA
CTGCCTGACTTGGGCTCGGTCTGAGTTTGAGGGTTTGCTTGAGAAGACAC
CAGCAGAAGTAAATGCCTATCTGACTAGTCCCACTGAGTACGCATCTGCA
ATGAAGAATGCTGGTGATGCTCAGGCCAGGGACAACTTGGACCGCGTCCT
TGAATGCCTTGATAAGGAGAGATGTGAAACATTCCAAGACTGTATCACCT
GGGCCCGTCTAAGGTTTGAAGACTACTTTGCTGACCGTGTGAAGCAATTG
ACATTTACTTTTCCTGAGAATGCTACAACCAGCAACGGGACACCCTTCTG
GTCAGCCCCCAAGCGTTTCCCCCGCCCTTTGCAGTTCTCAGTTGATGATC
TCAGTCACCTTCAATTTTTGATGGCAGCATCAATATTACGAGCTGAAACA
TATGGCATTCCTATCCCTGATTGGGTCAAGTCACCCGTAAAGCTAGCTGA
TGCTGTTAACAAAGTGATAGTCCCTGATTTCCAGCCCAAGGAAAATGTAA
AGATTGAGACAGATGAGAAAGCCACAAGTATGTCCACTGGATCAATTGAT
GATGCTGTAGTAATCAATGAGTTGCTCCAAAGNTAGAAATGCAGAGCGTG
CA
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