DC900317

Overview
NameDC900317
Unique NameDC900317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:266..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.457e-63
Identity = 121/157 (77.07%), Postives = 127/157 (80.89%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 472
            LHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVWK                 KERFAESKK            +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:   37 LHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.104e-62
Identity = 120/157 (76.43%), Postives = 125/157 (79.62%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 472
            LHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVWK                 KERFAESKK             VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRKMGYG+GFKWLSQYIK
Sbjct:   37 LHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.968e-61
Identity = 117/156 (75.00%), Postives = 123/156 (78.85%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVWK                 KERFAESK+             VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:   37 LHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.714e-59
Identity = 111/157 (70.70%), Postives = 122/157 (77.71%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 472
            LHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW+                 +ERF E+KK            NVPFL+LGNKIDIPYAASE+ELRYHLGL+  TTGKG +NLA +NVRP+EVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:   37 LHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.081e-58
Identity = 116/158 (73.42%), Postives = 122/158 (77.22%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA--DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVWK                 KERF+ESKK             VPFL+LGNKID PYAASE+ELRYHLGL+NFTTGKGKV  A  DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:   37 LHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.979e-44
Identity = 98/162 (60.49%), Postives = 110/162 (67.90%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGN---KIDIPYAASEE-ELRYHLGLSNFT-TGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 472
            LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWK                 KERFAESKK               FL L N   +I+ P     +   RYH+G +  +   +GKVNLADSNVRP+EVFMCSIVR+MGYG+GF+W+SQYIK
Sbjct:   37 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.503e-39
Identity = 83/156 (53.21%), Postives = 104/156 (66.67%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+WK                  ERFAE++             +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYG+GF+W+SQYI
Sbjct:   37 LHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.576e-39
Identity = 82/156 (52.56%), Postives = 98/156 (62.82%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVWK                  ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   42 LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.576e-39
Identity = 82/156 (52.56%), Postives = 98/156 (62.82%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVWK                  ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   42 LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
BLAST of DC900317 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.576e-39
Identity = 82/156 (52.56%), Postives = 98/156 (62.82%), Query Frame = 2
Query:    2 LHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 469
            LHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVWK                  ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   42 LHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
The following BLAST results are available for this feature:
BLAST of DC900317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1A_ARATH1.457e-6377.07GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM2.104e-6276.43GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH3.968e-6175.00GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC3.714e-5970.70GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM1.081e-5873.42GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC1.979e-4460.49GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA2.503e-3953.21Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1B_RAT5.576e-3952.56GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG5.576e-3952.56GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_MOUSE5.576e-3952.56GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]

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Properties
Property NameValue
Genbank descriptionDC900317 VSS Citrus sinensis cDNA clone VS28666 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900317 ID=DC900317; Name=DC900317; organism=Citrus sinensis; type=EST; length=817bp
GCTTCACATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGT
ATCCCACATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTT
GATTTGGGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGC
GATNGTTGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGT
TTGCAGAATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTG
GCCAATGTTCCCTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGC
TGCTTCTGAGGAAGAGTTGCGTTACCACCTTGGCCTATCAAATTTCACCA
CTGGGAAGGGGAAGGTTAATCTAGCGGACTCAAATGTCCGTCCACTGGAG
GTGTTTATGTGTAGCATAGTTCGCAAAATGGGATATGGTGATGGTTTCAA
ATGGCTCTCTCAATACATTAAGTAGGGTAATGCTCAGGAAGTGTTATAGA
AGTAATGCAGATTTCAAAATTTCACCCATGCCTACTACACCCTGTTTCAC
CAAAAAAAAATTGTGTTTATCTACTTGTTTGATCTTTTAGTCTGTTAGTG
GGACTTGAACCAGAGGTACTGTGTTTTGAGTCTGTTTGGAAGGTGGTAGT
TATGTTACTGCTCTGTAAAATTTACTTGTGGATAGCAGGTCATTATCTGG
TATTGTAGTTTTGTCAAATTACTTGCACCTATTGTCATGTTCTGCTGTGG
AGCAGATATTAGAATTATTATTTGTTATTATTTTGTTAAGGGTTAATTTC
AAGTTCAAAACATCCCT
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