CX043659

Overview
NameCX043659
Unique NameCX043659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11637 contig Csv1_Contig11637:271..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 7.176e-116
Identity = 199/268 (74.25%), Postives = 232/268 (86.57%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYD 806
            +AHL+T IKVARDDD+ EQIGK+IYFDLVDH+KVRSFRIQKQ PF  FKEEVAKEFGVPVQ QRFW+WAKRQNHTYRPNRPL+  EE QTVGQ+RE SNK +NAELKLFLE+ERGPD  PI PPEKT EDILLFFKLYDPE   LRYVGRL VKS+ KPM+ + +LN+MAG+APDEEI+L+EEIKFEP VMCE I+K+ +FR  Q+EDGDIIC+QK   IE   +FRYP+VPSFL+YV NR++V FR+LEKPKED+F +E+SKL+TYD
Sbjct:  561 QAHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASNKANNAELKLFLEIERGPDDLPIPPPEKTSEDILLFFKLYDPENAVLRYVGRLMVKSSSKPMDIVGQLNKMAGFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIE-ESEFRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYD 827          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 4.075e-111
Identity = 198/268 (73.88%), Postives = 224/268 (83.58%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYD 806
            +AHLYT+IKVARD+DL EQIGKDIYFDLVDHDKVRSFRIQKQ PF  FKEEVAKEFGVPVQ QRFW+WAKRQNHTYRPNRPLT  EE Q VGQ+RE SNK + AELKLFLEVE   DLRPI PPEK+KEDILLFFKLYDPEK  L Y GRL VKS+ KPM+   KLNEM G+APDEEI+L+EEIKFEP VMCE ++K+ +FR  Q+EDGDIICFQK    + + +  YP VPSFL+YV NRQ+V FR+LEKPKED+F LE+SK +TYD
Sbjct:  563 QAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREASNKANTAELKLFLEVEH-LDLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSSKPMDITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVNKEI-ECLYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYD 828          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP5_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe GN=ubp5 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-19
Identity = 79/287 (27.53%), Postives = 130/287 (45.30%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDI--YFDLVDHDKVRSFRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAE---LKLFLEVERGPDLRPIAPPEKTKE-DILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPI---EGVGKFRYPEVPSFLDYVHNRQVVHFRSL---------------EKPKEDDFCLEMSK 791
            E+HLYT +++   +   E    DI  + +    + +  FRI+K+  F+ F   VA++ G P +  RFW   KR N T R   P+  L  T     + EV N V N++   L+L+LE+    +L      + T E +  +F K +D + +E+   G L V  + +     P L E A    +  +++YEEIK     M + +    TF  S+L  GDIICF+   P    + +    +       D++ N+ +V FR                  + K DD C+E+ +
Sbjct:  567 ESHLYTKVQLITPEFYSEHHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTVRVESPVNELNST-----MEEVKN-VWNSQGEILRLYLEITPENELSSSLTHQNTGEWNAFIFVKYFDRKSQEISGCGTLHVNKSDEIRSICPLLCERANLPKNTPLNIYEEIK---PGMVDFLRLEKTFTQSELSTGDIICFEPCRPSALEDDIVNSGFDSALKLYDFLSNKVLVLFRPRFIDQDSIIEFEMLLDRRIKYDDLCIELGQ 844          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 73/272 (26.84%), Postives = 118/272 (43.38%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRS--FRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIA---PPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTY 803
            EAHLY  +++  +D      G D+Y    D +KVR   F++ K      F + +++  G P    R W    R N T RP       + ++T+ +L +  N        +FLE    P+L       P      D++LF K+YDP+   L Y G ++   + K  + LP + + AG+  D  + LYEE+K   +   +  +        +L DGDII FQK  P     +   P    +   +++R  V F     P +  F + +S    Y
Sbjct:  561 EAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGSKTMIELSDNENP-----WTIFLETV-DPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSEL--PTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNY 820          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 73/272 (26.84%), Postives = 117/272 (43.01%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRS--FRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIA---PPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTY 803
            EAHLY  +++  +D      G D+Y    D +KVR   F++ K      F + +++  G P    R W    R N T RP       +  +T+ +L +  N        +FLE    P+L       P      D++LF K+YDP+   L Y G ++   + K  + LP + + AG+  D  + LYEE+K   +   +  +        +L DGDII FQK  P     +   P    +   +++R  V F     P +  F + +S    Y
Sbjct:  561 EAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENP-----WTIFLETV-DPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSEL--PTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNY 820          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP7_CHICK (Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19
Identity = 71/272 (26.10%), Postives = 117/272 (43.01%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRS--FRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIA---PPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTY 803
            EAHLY  +++  +D      G D+Y    D +KV+   F++ K      F + +++  G P    R W    R N T RP       +  +T+ +L +  N        +FLE    P++       P      D++LF K+YDP+   L Y G ++   + K  + LP + E AG+  +  + LYEE+K   +   +  +        +L DGDII FQK  P     +   P    +   +++R  V F     P +  F + +S    Y
Sbjct:  560 EAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENP-----WTIFLETV-DPEMAATGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCERAGFPQETNLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDSSEL--PTAKEYFRDLYSRVDVIFCDKTIPNDPGFVVTLSNRMNY 819          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 72/272 (26.47%), Postives = 117/272 (43.01%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRS--FRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHLEETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIA---PPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSVMCEPIEKRCTFRASQLEDGDIICFQKSTPIEGVGKFRYPEVPSFLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTY 803
            EAHLY  +++  +D      G D+Y    D +KV+   F++ K      F + +++  G P    R W    R N T RP       +  +T+ +L +  N        +FLE    P+L       P      D++LF K+YDP+   L Y G ++   + K  + LP + + AG+  D  + LYEE+K   +   +  +        +L DGDII FQK  P     +   P    +   +++R  V F     P +  F + +S    Y
Sbjct:  560 EAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENP-----WTIFLETV-DPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSEL--PTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNY 819          
BLAST of CX043659 vs. ExPASy Swiss-Prot
Match: UBP7_DROME (Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster GN=Usp7 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.464e-16
Identity = 81/277 (29.24%), Postives = 125/277 (45.13%), Query Frame = 3
Query:    3 EAHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKV--RSFRIQKQIPFNLFKEEVAKEFGVPVQFQRFWLWAKRQNHTYRPNRPLTHL----EETQTVGQLREVSNKVHNAELKLFLEVERGPDLRPIAPPEKTKEDILLFFKLYDPEKEELRYVGRLFVKSTGKPMEYLPKLNEMAGYAPDEEIDLYEEIKFEPSV-MCEPIEKRCTFRASQLEDGDIICFQKSTPIEGV-GKFRYPEVPS-FLDYVHNRQVVHFRSLEKPKEDDFCLEMSKLYTYD 806
            EA+ Y  + V  +++  EQ  + ++    D +KV  R FRI++    +   +   + FGV  Q  R W     Q   +      +H     E ++T+ Q+   S K     L+L      GP      PP   K + LLF K YDP  + L Y+G      T + ++ +P +N   G+ PD E+ +Y+E   +  V + EPIE         L+ G I+ F++    E V  K   P V   FLD V+  +++ F     P E DF LE+S  Y YD
Sbjct:  587 EANTYVSVHVILEENFEEQHKRRLF----DLEKVHPRVFRIKQNQTVDELVDLFVRGFGVSRQRMRMWNLCTAQTQKF------SHFDFVAEGSRTIEQI-STSQKPWVIWLQLAWTDVPGP-----LPPFNPKTESLLFLKYYDPRNKRLNYIGCTQQPHTRRLIDLVPDVNSKLGFEPDTELTIYDEYADKKLVNLNEPIESALFIPQDHLQ-GHILIFER----ENVDAKLDLPTVGDYFLDLVYRIEII-FSDKCNPNEPDFTLELSNRYNYD 841          
The following BLAST results are available for this feature:
BLAST of CX043659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UBP13_ARATH7.176e-11674.25Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH4.075e-11173.88Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP5_SCHPO1.259e-1927.53Probable ubiquitin carboxyl-terminal hydrolase 5 O... [more]
UBP7_RAT2.804e-1926.84Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE3.662e-1926.84Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_CHICK6.246e-1926.10Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus ... [more]
UBP7_HUMAN8.158e-1926.47Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
UBP7_DROME6.464e-1629.24Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosoph... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12F04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F04-K8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043659 ID=CX043659; Name=CX043659; organism=Citrus sinensis; type=EST; length=807bp
CAGAAGCACACCTTTATACCGTTATCAAGGTTGCAAGGGATGATGACCTT
TTGGAACAGATTGGAAAGGATATCTATTTTGATCTTGTGGATCATGACAA
AGTTAGGAGTTTTCGTATTCAGAAGCAGATACCTTTCAACCTTTTCAAGG
AAGAGGTTGCCAAAGAGTTTGGTGTTCCAGTGCAATTTCAGCGCTTTTGG
CTGTGGGCAAAGCGTCAAAACCATACATACCGTCCTAATAGGCCATTGAC
ACATCTAGAAGAAACGCAAACTGTTGGACAGTTGAGGGAGGTGTCAAATA
AGGTCCATAATGCAGAACTGAAGTTATTCTTAGAAGTAGAACGTGGACCG
GATTTACGCCCTATTGCTCCACCTGAGAAGACAAAGGAAGATATTTTGCT
CTTCTTCAAGCTTTATGACCCTGAGAAAGAAGAGCTGCGTTATGTTGGAA
GGCTTTTTGTGAAAAGTACCGGTAAGCCGATGGAATATTTGCCAAAACTA
AATGAAATGGCTGGTTATGCTCCTGATGAAGAAATCGATCTATATGAGGA
AATTAAGTTTGAGCCCAGTGTAATGTGTGAGCCCATAGAAAAGAGATGCA
CGTTTCGAGCTAGCCAGCTTGAAGATGGAGACATTATTTGCTTTCAAAAA
TCTACTCCAATTGAAGGTGTTGGTAAATTTCGCTATCCGGAAGTGCCTTC
ATTCTTGGACTATGTGCACAATCGCCAAGTGGTTCATTTTCGGTCTCTTG
AAAAACCCAAGGAAGATGATTTCTGTCTAGAGATGTCAAAGCTTTATACT
TATGATG
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