CX043658

Overview
NameCX043658
Unique NameCX043658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10022 contig Csv1_Contig10022:97..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.916e-74
Identity = 129/152 (84.87%), Postives = 141/152 (92.76%), Query Frame = -3
Query:  432 EKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 887
            E+IENINDQYWTLRAEEIPEEEKN+GP+DRLIHVYHFTKE  QNQ Q+QNFGEPFFLVIHEGETL+EIK RIQ+KL VPDE+FAKWKFA  S+GRP+YL DTD+V +RFQRRDVYGAWEQYLGLEH D+APKRAYAANQNRH YEKPVKIYN
Sbjct:  965 ERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQNQ-QVQNFGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN 1115          
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 2.546e-72
Identity = 128/152 (84.21%), Postives = 142/152 (93.42%), Query Frame = -3
Query:  432 EKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 887
            E+IENINDQYWTLRAEEIPEEEKN+GP+DRLI VYHF KET QNQ Q+QNFGEPFFLVIHEGETL+EIK RIQ+KL V DE+FAKWKFAF+S+GRPEYLQDTD+V +RFQRRDVYGA+EQYLGLEH+D+ PKRAYAANQNRH YEKPVKIYN
Sbjct:  966 ERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQ-QVQNFGEPFFLVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116          
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  432 TLRAEEIPEEEKNLGP-HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 854
            T R EEIP ++ N+   ++ LI V HF KE          FG PF L IH+GE  +E+  RIQ  L + ++EF K+KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct:  970 TFRIEEIPLDQVNIDKENEMLITVAHFHKEV------FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1103          
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.855e-14
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  432 TLRAEEIPEEEKNLGP-HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 854
            T R EEIP ++ ++   ++ LI V HF KE          FG PF L IH+GE  +E+  RIQ  L + ++EF K+KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct:  970 TFRIEEIPLDQVDIDKENEMLITVAHFHKEV------FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1103          
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.422e-14
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  432 TLRAEEIPEEEKNLGP-HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 854
            T R EEIP ++ ++   ++ L+ V HF KE          FG PF L IH+GE  +E+  RIQ  L + ++EF K+KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct:  969 TFRIEEIPLDQVDIDKENEMLVTVAHFHKEV------FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1102          
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP7_DROME (Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster GN=Usp7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.678e-13
Identity = 51/156 (32.69%), Postives = 76/156 (48.72%), Query Frame = -3
Query:  432 EKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ----YLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 887
            E I        T R EE+P E+  L  ++ LI V HF+KE         +FG PF     +GE    +K RIQR+L V D+E+  +KF  +S+G    + D   V       +VY +W      + GL+H + + KR+     + +  EK +KIYN
Sbjct:  990 ESITTAQGAQKTFRIEEVPAEDMQLAENEFLIPVAHFSKEL------YNSFGIPFLTKARQGEPYGALKQRIQRRLNVQDKEWENYKFCVISMGHNADVNDNTPVD-----LEVYRSWTSGQLPFFGLDHINKSRKRS-----SLNFSEKAIKIYN 1129          
BLAST of CX043658 vs. ExPASy Swiss-Prot
Match: UBP7_CHICK (Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.867e-12
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = -3
Query:  432 TLRAEEIPEEEKNLGP-HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 854
            T R EEIP  + ++   ++ LI V HF KE          FG PF L IH+G   +E+  RIQ  L + ++EF K+KFA + +GR  YL + +   +        G       +LGL+H + APK       +R+TY EK  KI+N
Sbjct:  969 TFRIEEIPLAQVDIDKENEMLITVAHFHKEV------FGTFGIPFLLRIHQGGHFREVMKRIQTMLDIQEKEFEKFKFAIVMMGRHTYLNEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPK-------DRYTYLEKAYKIHN 1101          
The following BLAST results are available for this feature:
BLAST of CX043658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UBP13_ARATH7.916e-7484.87Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH2.546e-7284.21Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP7_RAT4.881e-1536.99Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE1.855e-1436.30Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_HUMAN2.422e-1435.62Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
UBP7_DROME2.678e-1332.69Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosoph... [more]
UBP7_CHICK3.867e-1235.62Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12F04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F04-K8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043658 ID=CX043658; Name=CX043658; organism=Citrus sinensis; type=EST; length=889bp
CTTTTACAAAAAAATATGTATATATATCTCTCTCTGTGGAAACAGGCTCA
CAACAGTGGCTGATCAGCCATCTACATGAAAACAAAAATCAGGAAAGCAA
ACATGATGAAAAAGGAAAATAAAGAAACAAGGATTAATTAAAAAGGGGAA
AAAAGAAAACAAGGATCACCCACTATACCCTATAAATATATCTGTGACAA
CACTTGCAGATAGATACACATTTGCTAAAGGGGAAATGTCCTCCCAATCC
AAGCTAGCTGAAGAAGAATTACAATACCCCAATAAAGTCAACAACCATAT
GCTTTCCCTTTTCACTTTCATAGCCTCGATCCCTTTTCATTTTTGCCATT
TTTACAGATCAATTGGTGTTGAGGCTTACCAACTGAATCCACAGCCATGG
ATGAAATTCATGCATCTTCAAATGTTTCCTAATTGTAGATTTTAACTGGC
TTCTCATACGTGTGCCGATTCTGGTTAGCAGCATATGCCCTTTTAGGAGC
ACTGTCTGAGTGTTCCAATCCAAGATATTGCTCCCAAGCACCATAAACAT
CTCTTCTCTGAAAACGACTGGAAACAATGTCCGTGTCCTGAAGGTATTCT
GGGCGACCAAGAGAAAGGAATGCAAACTTCCACTTAGCAAACTCTTCATC
TGGAACTTGCAGTTTCCTCTGTATTCGCACTTTTATTTCTTGCAGAGTCT
CACCTTCATGTATAACTAAGAAAAACGGTTCACCAAAGTTCTGAATTTGC
ATCTGGTTCTGAGCTGTCTCTTTTGTAAAGTGATAAACATGAATTAGACG
ATCATGTGGACCGAGATTTTTTTCTTCTTCTGGAATCTCTTCTGCCCTTA
ATGTCCAGTATTGATCATTTATATTCTCAATCTTTTCAT
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