CX043655

Overview
NameCX043655
Unique NameCX043655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043655_ssr507 microsatellite CX043655_ssr507:507..518. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3592 contig Csv1_Contig3592:4..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.488e-53
Identity = 105/139 (75.54%), Postives = 115/139 (82.73%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            MSS  +TKGGRGKPK++KS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNK NRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP+K+GKG+ +IGSASQEF
Sbjct:    1 MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.220e-52
Identity = 105/140 (75.00%), Postives = 114/140 (81.43%), Query Frame = 2
Query:   29 SMSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            S + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF
Sbjct:    3 SGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.369e-52
Identity = 103/138 (74.64%), Postives = 113/138 (81.88%), Query Frame = 2
Query:   35 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLK+GKYA+RVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF
Sbjct:    5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.932e-51
Identity = 106/139 (76.26%), Postives = 113/139 (81.29%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            MSS+G+ KGGRGK KSTKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP+K GK + +IGSASQEF
Sbjct:    1 MSSSGA-KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48
Identity = 102/139 (73.38%), Postives = 109/139 (78.42%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            MSSAG   GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                  GNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF
Sbjct:    1 MSSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.821e-48
Identity = 102/139 (73.38%), Postives = 109/139 (78.42%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            MSSAG   GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                  GNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF
Sbjct:    1 MSSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 98/137 (71.53%), Postives = 107/137 (78.10%), Query Frame = 2
Query:   38 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            S+    GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                  GNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF
Sbjct:    2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 98/137 (71.53%), Postives = 107/137 (78.10%), Query Frame = 2
Query:   38 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 448
            S+    GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                  GNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF
Sbjct:    2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 89/133 (66.92%), Postives = 95/133 (71.43%), Query Frame = 2
Query:   32 MSSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG--KGRED 424
            M+  G T G  G  K+T   SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP+K G  K +ED
Sbjct:    1 MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED 130          
BLAST of CX043655 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 82/123 (66.67%), Postives = 91/123 (73.98%), Query Frame = 2
Query:   59 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 421
            G+GK    K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP                  GNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLP+K   GKG E
Sbjct:    5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEE 127          
The following BLAST results are available for this feature:
BLAST of CX043655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_CICAR6.488e-5375.54Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH3.220e-5275.00Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH9.369e-5274.64Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB7.932e-5176.26Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ2.821e-4873.38Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI2.821e-4873.38Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ1.003e-4571.53Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.003e-4571.53Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A6_ARATH1.188e-3866.92Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A_CHLRE4.514e-3866.67Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12F01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F01-K2-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043655 ID=CX043655; Name=CX043655; organism=Citrus sinensis; type=EST; length=682bp
CAAGAGAGCATTTGCATTATTTTGTCAATCGATGAGCTCCGCAGGATCAA
CGAAGGGCGGCAGAGGCAAGCCCAAGTCGACCAAATCAATTTCCAGATCT
CACAAGGCTGGCCTTCAGTTCCCCGTCGGCCGTATTGCTCGCTTCCTCAA
AGCCGGAAAGTACGCCGATCGCGTGGGTGCCGGCGCCCCCGTCTACCTAT
CGGCTGTTCTTGAATACCTTGCTGCTGAGGTTTTGGAGCTTGCTGGCAAT
GCTGCAAGGGATAACAAAAAGAACCGTATCGTTCCAAGGCACATTCAACT
AGCTGTGAGGAATGATGAAGAATTAAGCAAGCTTTTGGGCACAGTTACTA
TTGCAAATGGAGGAGTTCTGCCAAACATTCATCAGAACCTGTTGCCAAGG
AAAATGGGCAAAGGAAGGGAGGATATTGGATCTGCTTCGCAAGAATTTTA
GTGCTGAAACTTCTCTGCTTGTTGAATTTGAATACTTAAAAAAAAAAAAA
ATGCAGGATTGATTGATTTACGCAATTTTTTTCTTTATTTGTGATCCTTT
TATCTCCGTGTAAACTGGGATTTGGGTTCCGGCCGAATATAGTGAAACAA
TAATTTTTTGATGTCCCATCTCATTGTGTGGGGGTTTAAAGTTAGCAACA
ATGAAGTTGGTTTGCATTAAAAAAAAAAAAAA
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