DC900288
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19 Identity = 47/139 (33.81%), Postives = 83/139 (59.71%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 429 +NRGF F+ Y ++ A +R+++++ K+ GN TV WADP PD A +VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ + EI+G+ +E+VLAKP K+ E Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 418
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19 Identity = 54/180 (30.00%), Postives = 94/180 (52.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE--------------GTFPYSPGLVPTHLPHAGYGGFAGTPY 510 +NRGF F+ Y ++ A +R+++++ K+ GN TV WADP PD A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +++G+ +E+V AKP K+ E + Y P +P G GG G Y Sbjct: 284 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGY 456
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19 Identity = 54/180 (30.00%), Postives = 94/180 (52.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE--------------GTFPYSPGLVPTHLPHAGYGGFAGTPY 510 +NRGF F+ Y ++ A +R+++++ K+ GN TV WADP PD A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +++G+ +E+V AKP K+ E + Y P +P G GG G Y Sbjct: 194 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGY 366
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 7.944e-19 Identity = 54/180 (30.00%), Postives = 94/180 (52.22%), Query Frame = 1 Query: 13 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE--------------GTFPYSPGLVPTHLPHAGYGGFAGTPY 510 +NRGF F+ Y ++ A +R+++++ K+ GN TV WADP PD A +VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++ +++G+ +E+V AKP K+ E + Y P +P G GG G Y Sbjct: 284 KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-KVKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGY 456
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM46_MOUSE (Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15 Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 426 ++NRGF+FV Y ++ A +R+K++ F+L G+T V WADP+ D +VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+ IDG +EV LAKP + T Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVD-EETMQRVKVLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM46_MACFA (Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15 Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 426 ++NRGF+FV Y ++ A +R+K++ F+L G+T V WADP+ D +VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+ IDG +EV LAKP + T Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVD-EETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM46_HUMAN (Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.402e-15 Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 426 ++NRGF+FV Y ++ A +R+K++ F+L G+T V WADP+ D +VK LYV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+ IDG +EV LAKP + T Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVD-EETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: RBM46_XENTR (Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15 Identity = 50/135 (37.04%), Postives = 77/135 (57.04%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 ++NRGF+FV+Y ++ A +R+K++ F+L G+T V+WA P+ D +VK LYV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+ IDG +EV LAKP Sbjct: 181 TKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVD-EETMQKVKVLYVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSVMNGRLIDGARIEVTLAKP 308
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: A1CF_PONAB (APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15 Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 ++NRGF+FV Y ++ A +R+K+L +L G+ V WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+K +DG +EV LAKP Sbjct: 176 TKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303
BLAST of DC900288 vs. ExPASy Swiss-Prot
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15 Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1 Query: 10 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTVSWADPKSTPDXSAAASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 408 ++NRGF+FV Y ++ A +R+K+L +L G+ V WA+P+ D +S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+K +DG +EV LAKP Sbjct: 176 TKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 303 The following BLAST results are available for this feature:
BLAST of DC900288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900288 ID=DC900288; Name=DC900288; organism=Citrus sinensis; type=EST; length=794bpback to top |