CX043597

Overview
NameCX043597
Unique NameCX043597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043597 vs. ExPASy Swiss-Prot
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe GN=SPAC24B11.05 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.063e-14
Identity = 73/261 (27.97%), Postives = 104/261 (39.85%), Query Frame = 3
Query:  120 LLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTLAGLRAIGYQFDCDDFHSYVHGRLPY-MMLKPDPVLRNLLLSL--PIRKVIFTNADKTHAARVLSRLGLEDCFERIISFETLNSTDKGTVLVDQDASESERPTELFDIDDYCSRPNADLELPRTPVVCKPFEEAFEQVFKIANINPR-KTIFFDDSIRNLETGKRLGLHTVWVGTSHRAEGVD---------YALESIHNIKEALPEL 863
            + FDLD+ +YP +  +   +   I  +   KL I   +   L    Y+ YG  + GL  + ++ D  D+   V   LP   ++K D VLR +LL L    +  IFTNA   HA RVL  LG+EDCF+ I                                  YC     DL       + KP  E +E+V + A +  + K IF DDS  N+   +  G    W  T    E  D         + +  IH  K  L E+
Sbjct:    8 IFFDLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VLHHEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDGI---------------------------------TYCDYNAKDL-------IAKPMPEMYERVMREAGVTDKDKCIFVDDSYGNILGAREFG----WKYTVQLVEHGDPLPQPQAGSHVIRDIHKFKHLLDEI 223          
BLAST of CX043597 vs. ExPASy Swiss-Prot
Match: SSM1_YEAST (Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.618e-13
Identity = 67/232 (28.88%), Postives = 102/232 (43.97%), Query Frame = 3
Query:  102 NQKYDCLLFDLDDTIYPLTSGLSKEVTKNIQEYMLQKLCIEEAKVPELCVSLYKFYGTTLAGLRAIGYQFDCDDFHSYVHGRLPYM-MLKPDPVLRNLLLSL----PIRKV-IFTNADKTHAARVLSRLGLEDCFERIISFETLNSTDKGTVLVDQDASESERPTELFDIDDYCSRPNADLELPRTPVVCKPFEEAFEQVFKIANINPRKTIFF-DDSIRNLETGKRLGLHT 776
            N       FD+D+ +Y  ++ +   + ++I  +    L +       L  S YK YG  + GL  + ++ +  +++  V   LP   +LKPD  LRN+LL L     I K+ +FTNA K HA R L  LG+ D                                 LFD   YC     D       +VCKP  +AFE+  K + +   +  +F DDS +N+ETG +LG+ T
Sbjct:   52 NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIAD---------------------------------LFDGLTYCDYSRTD------TLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKT 243          
The following BLAST results are available for this feature:
BLAST of CX043597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YAI5_SCHPO1.063e-1427.97Uncharacterized protein C24B11.05 OS=Schizosacchar... [more]
SSM1_YEAST7.618e-1328.88Protein SSM1 OS=Saccharomyces cerevisiae GN=SSM1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12B10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B10-C20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043597 ID=CX043597; Name=CX043597; organism=Citrus sinensis; type=EST; length=876bp
CTTTTCTTCAGCATCTGTTAAGAACACATTGCTCATTTTCCAATCAGTTT
GAGTTCCTTTAGCTAAAAATGGAATACAAGAATGAGAACAAGCAGGTTTC
AAACCAAAAATATGATTGTCTCTTATTTGATCTAGATGACACCATTTATC
CTCTGACTTCTGGATTGTCAAAAGAAGTGACCAAGAATATTCAAGAATAT
ATGCTCCAAAAGCTTTGCATCGAGGAGGCTAAAGTCCCTGAATTGTGTGT
TTCTTTGTACAAATTCTATGGGACAACATTGGCAGGTCTTCGGGCTATCG
GCTATCAGTTTGACTGTGATGACTTCCACAGTTATGTTCATGGGAGATTG
CCCTACATGATGCTAAAACCTGACCCTGTTTTAAGGAATCTTTTGCTTAG
TCTGCCCATTCGGAAAGTTATTTTTACCAATGCAGATAAAACTCATGCTG
CTAGAGTGCTTAGCAGGCTTGGTCTGGAGGATTGCTTTGAAAGAATTATA
TCCTTTGAAACTTTGAATTCCACCGACAAAGGCACTGTTCTGGTGGATCA
GGATGCCTCCGAATCCGAAAGACCTACTGAATTATTTGACATTGATGATT
ATTGTTCTCGTCCCAATGCTGATCTCGAACTTCCAAGGACTCCAGTTGTC
TGCAAACCTTTTGAAGAAGCATTTGAACAAGTTTTTAAGATTGCCAACAT
CAACCCTCGGAAAACTATATTTTTTGATGACAGTATTCGTAATTTAGAGA
CTGGTAAAAGATTGGGGCTTCATACTGTATGGGTGGGCACTTCCCACAGA
GCTGAAGGTGTGGACTATGCATTAGAGAGCATCCACAATATCAAGGAAGC
ATTGCCGGAGCTCTGGGAAGTTGCTG
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