CX043592

Overview
NameCX043592
Unique NameCX043592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = -2
Query:  542 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 703
            GTY +KKCRT+CG+PSQRWYH+PRSWL P+GNLLVVFEEWGG+P  ISL++R T
Sbjct:  671 GTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVERGT 724          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            G Y EKKC ++CG+PSQRWYHVPRSWLKP GNLLV+FEEWGG+P  ISL+KRT
Sbjct:  673 GIYNEKKCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDPSGISLVKRT 725          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GTYTE KC + CGK SQ+WYHVPRSWL+P GNLLVVFEEWGG+  W+SL+KRT
Sbjct:  677 GTYTETKCLSDCGKSSQKWYHVPRSWLQPRGNLLVVFEEWGGDTKWVSLVKRT 729          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GT+TEKKC + CG+ SQRWYHVPRSWLKP+ NL++V EEWGGEP+ ISL+KRT
Sbjct:  674 GTFTEKKCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPNGISLVKRT 726          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = -2
Query:  548 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR 703
            GT+ E KC   CG+ SQRWYHVPRSWLKPSGNLLVVFEEWGG+P+ I+L++R
Sbjct:  681 GTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLVRR 732          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = -2
Query:  548 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR 703
            G + EKKC T CG+ SQRWYHVPRSWL P+GNLLVVFEEWGG+P+ I+L+KR
Sbjct:  669 GWFDEKKCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPYGITLVKR 720          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            G Y E KC+T CG  SQRWYHVPRSWL P+GNLLV+FEEWGG+P  IS++KR+
Sbjct:  667 GEYDETKCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRS 719          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GTY EKKC + CG+ SQRWYHVPRSWL P+GN LVV EEWGG+P  IS++KR+
Sbjct:  667 GTYNEKKCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDPTGISMVKRS 719          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GTY   KC+T CG+P+QRWYHVPR+WLKPS NLLV+FEE GG P  +SL+KR+
Sbjct:  680 GTYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRS 732          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSJ (Beta-galactosidase 4 OS=Oryza sativa subsp. japonica GN=Os02g0219200 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = -2
Query:  542 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 703
            GTY E KCR+ CG  SQRWYHVPRSWLKP GNLLVV EE+GG+   +SL  RTT
Sbjct:  676 GTYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGDLAGVSLATRTT 729          
The following BLAST results are available for this feature:
BLAST of CX043592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BGAL_MALDO1.186e-2075.93Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGAL2_ARATH2.641e-2077.36Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_DIACA1.004e-1975.47Putative beta-galactosidase OS=Dianthus caryophyll... [more]
BGA12_ARATH6.506e-1973.58Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL1_ARATH7.193e-1873.08Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC1.227e-1773.08Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL2_ORYSJ1.227e-1769.81Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL_ASPOF3.570e-1769.81Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL3_ARATH1.357e-1667.92Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL4_ORYSJ6.733e-1670.37Beta-galactosidase 4 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12B07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B07-C14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043592 ID=CX043592; Name=CX043592; organism=Citrus sinensis; type=EST; length=704bp
TTTTTTTTTTTTTTTTTATTCAATTGTTTTCACTTTATTGCATCGGGAAT
ACAAAGTTCTTCAAATGAGCTCATTCACATGGAGGCGTATGGCAGCAACA
CTCAAAGCAAATTCGGAACTTAAATGCAATTCAAAAGCTGCTATCTATTA
CTTTCCCACTTATTTTTAAATGACAAGGAAATAAAAGATTTCCACTATAA
ACTTGTAGTTGATGAAGAGTGAAACCCAGCGAGCCTACATGAATGTTTGA
GGAACTAACACTTTTGCCTATTTGACTGAATGACCTTTAAGTATGCTTGC
AGAGCTATATTGACAAATATATAGCTTGACTATGACTATGTACATACAAC
AAGGAGCATCCTTGCAACAACTTCACAATCTATACTTCTTGGCTTTGGCC
AGATTATGGGTATGGTTGGACACTTTGGTTTGCCCGTTTGTCGGAGTCAA
ACCATCATCACCTTAGCAAATGAGGGAAGCGTATGCTTGAATTATTGAAG
AATGAGAAAAAGAAAAAGAAAATAATTGTCGTAGCTGTTTATGTTGTTCT
CTTGAGCAAAGAGATCCAATGTGGTTCACCGCCCCATTCTTCAAACACAA
CCAACAGGTTTCCACTCGGCTTCAGCCATGAGCGGGGAACGTGATACCAT
CGTTGAGAGGGCTTTCCGCAGTAAGTTCGGCATTTCTTCTCGGTGTAAGT
TCCA
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