CX043591

Overview
NameCX043591
Unique NameCX043591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1611 contig Csv1_Contig1611:460..1295. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043591 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.849e-61
Identity = 124/207 (59.90%), Postives = 140/207 (67.63%), Query Frame = -3 
Query:  226 LCLYGLLNETWXXXXXXXXXXXXXXXXXLGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQPKDLSA-NHNXXXXXXXXXSRPAESQTKAVKMSP-PPKXXXXXXXXXXXXXEQGAT-CGACGDNYGTDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSSKRAR 834
            LCLYG  NE W                 LGINFARDGM EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G A KQ KD S+ ++N          R +ES+ K  K  P   +             EQG T CGACG++Y  DEFWICCD+CE WFHGKCVKITPA+AEHIKQYKCPSCS+KRAR
Sbjct:   48 LCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CX043591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.849e-6159.90PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B06-C12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043591 ID=CX043591; Name=CX043591; organism=Citrus sinensis; type=EST; length=836bp
TTTTCTTAAACCACCAGAAAACTTGCTCCAACATTTGCATTTCTAAATGC
CAGCAGCTATTTCAAAACACAAATTCCAGAGAAAATTAAACAGGAGTTGC
AAATTCATTGACTAAAACAGGTATCTGACTCTGTTTTACTCTCAAACTGT
AACGAAAAAAGTTCTAATCTTGTCTTGCTTTGTTCAATCGTTGTTCAATT
CCCAACTTCATAACTGATCTTAAACTCTAGCCCTCTTGCTACTGCAGCTG
GGGCACTTGTACTGCTTGATGTGCTCGGCCTTCGCAGGTGTAATCTTTAC
ACATTTGCCGTGGAACCATTTCTCACAGATATCGCAGCAGATCCAGAATT
CGTCAGTGCCATAGTTATCCCCGCATGCTCCACAGGTGGCACCCTGTTCA
TCATCTTCCTCTTCTTCATCACCGCTATCATCATCGTCCTTCGGTGGTGG
AGACATCTTCACTGCTTTGGTTTGTGATTCAGCTGGACGAGACTTTCCAC
TCGATTTGCTTTTGCTGCTATTGTGATTAGCAGATAGGTCCTTTGGTTGC
TTAGCATTTCCAGTTACAACTTCAAAGATGGTTGGGAGATCATTTATCAT
CTGGAAAAGTTTCTTCCTTTCATTTTTGCCAAATCCAAAGCGTGCACCAA
AATAAAAAGCTACAGCAAGCAACCATGAATCACTGTGCACTGCAACCAGT
GATAACCAGTCCTTCTCCTGCATTCCATCTCTAGCAAAGTTTATACCTAA
TGCTGGCTCAGGGAGCTCGGGAGGCACCTCCTCAACAGGCAGATTAACTT
CCCATGTCTCATTAAGAAGCCCGTATAGGCACAAGT
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