CX043590

Overview
NameCX043590
Unique NameCX043590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1611 contig Csv1_Contig1611:386..1263. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043590 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 8.605e-73
Identity = 138/229 (60.26%), Postives = 159/229 (69.43%), Query Frame = 2 
Query:   11 LIKALTADVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQPKDLSA-NHNXXXXXXXXXXRPAESQTKAVKMSP-PPKXXXXXXXXXXXXXXQGAT-CGACGDNYGTDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSSKRAR 685
            +IKALT DV++F++ CDPEKENLCLYG PNE W                  GINFARDGM EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G A KQ KD S+ ++N          R +ES+ K  K  P   +              QG T CGACG++Y  DEFWICCD+CE WFHGKCVKITPA+AEHIKQYKCPSCS+KRAR
Sbjct:   26 MIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CX043590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH8.605e-7360.26PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B06-C12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043590 ID=CX043590; Name=CX043590; organism=Citrus sinensis; type=EST; length=878bp
CTCGTGCCGCTTGATTAAGGCTTTAACAGCTGATGTTGAGAAGTTCTACC
AGCAGTGCGATCCTGAAAAAGAGAACTTGTGCCTATACGGGCTTCCTAAT
GAGACATGGGAAGTTAATCTGCCTGTTGAGGAGGTGCCTCCCGAGCTCCC
TGAGCCAGCATTAGGTATAAACTTTGCTAGAGATGGAATGCAGGAGAAGG
ACTGGTTATCACTGGTTGCAGTGCACAGTGATTCATGGTTGCTTGCTGTA
GCTTTTTATTTTGGTGCACGCTTTGGATTTGGCAAAAATGAAAGGAAGAA
ACTTTTCCAGATGATAAATGATCTCCCAACCATCTTTGAAGTTGTAACTG
GAAATGCTAAGCAACCAAAGGACCTATCTGCTAATCACAATAGCAGCAAA
AGCAAATCGAGTGGAAAGTCTCGTCCAGCTGAATCACAAACCAAAGCAGT
GAAGATGTCTCCACCACCGAAGGACGATGATGATAGCGGTGATGAAGAAG
AGGAAGATGATGAACAGGGTGCCACCTGTGGAGCATGCGGGGATAACTAT
GGCACTGACGAATTCTGGATCTGCTGCGATATCTGTGAGAAATGGTTCCA
CGGCAAATGTGTAAAGATTACACCTGCGAAGGCCGAGCACATCAAGCAGT
ACAAGTGCCCCAGCTGCAGTAGCAAGAGGGCTAGAGTTTAAGATCAGTTA
TGAAGTTGGGAATTGAACAACGATTGAACAAAGCAAGACAAGATTAGAAC
TTTTTTCGTTACAGTTTGAGAGTAAAACAGAGTCAGATACCTGTTTTAGT
CAATGAATTTGCAACTCCTGTTTAATTTTCTCTGGAATTTGTGTTTTGAA
ATAGCTGCTGGCATTTAGAAATGCAAAT
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