CX043587
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 9.573e-20 Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = -1 Query: 282 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTES*LQF*SVHVCSEETSFSNKKLLS 794 T SRG ++TMGS+ AK AI DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR+ F +SA+V++DR +R FGFI+FSS ++AL ++N + GR + R V ++ + V S E N +LLS Sbjct: 151 TDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL--RLNVAGQKAPVSSPPVVETSPENDSDNSELLS 320
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.358e-18 Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = -1 Query: 357 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 803 N +T SRG G++TM ++ A+ A+ + DV GR + V N R E PP+ +E +++YVGN+ W + L F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G GRTI V DR+ Sbjct: 170 NRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.882e-16 Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = -1 Query: 360 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 803 N ET SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P ++ YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E DA +L+G GR + V +R Sbjct: 89 NRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRV---------YVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16 Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = -1 Query: 360 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 803 N ET SRG G++TM ++ A A+ D+ GR + V + SR A P +++YVGN+ W + L F G VVSARV+ DR+ +R FGF++ SS+AE A+ +L+G GRTI V +R Sbjct: 131 NRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT---------YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15 Identity = 54/149 (36.24%), Postives = 77/149 (51.68%), Query Frame = -1 Query: 360 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 803 N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR A VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + GR I V +R Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPR---------VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14 Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = -1 Query: 378 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM----NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 794 TG SRG G++TM S + A +G ++ GR +RV NS R + + ++S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I V Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14 Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = -1 Query: 378 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 794 TG SRG G++TM S + A +G ++ GR +RV R ++ S F +S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I V Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13 Identity = 53/163 (32.52%), Postives = 78/163 (47.85%), Query Frame = -1 Query: 360 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 794 TG SRG G++TM + + A +G ++ GR +RV R R+ + + +S +++YVGNLSW V L+ F G VV A+V++DR +R FGF+++SS E DA SLNG D GR+I V +R Sbjct: 124 TGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12 Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = -1 Query: 372 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 794 +G SR G++TM ++ A I L+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN + G+ I V + Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11 Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -1 Query: 360 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 605 E ++ +VG L+WA EDL+ F +FG V+ +++++DR+ +R FGF++F + A RDA +NG + GR I V E R Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85 The following BLAST results are available for this feature:
BLAST of CX043587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043587 ID=CX043587; Name=CX043587; organism=Citrus sinensis; type=EST; length=803bpback to top |