CX043587

Overview
NameCX043587
Unique NameCX043587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3585 contig Csv1_Contig3585:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.573e-20
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = -1
Query:  282 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTES*LQF*SVHVCSEETSFSNKKLLS 794
            T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++DR    +R FGFI+FSS    ++AL ++N  +  GR +  R  V   ++ +    V   S E    N +LLS
Sbjct:  151 TDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL--RLNVAGQKAPVSSPPVVETSPENDSDNSELLS 320          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.358e-18
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = -1
Query:  357 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 803
            N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF++ +S+AE  DA  +L+G    GRTI V    DR+
Sbjct:  170 NRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.882e-16
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = -1
Query:  360 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 803
            N ET  SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R       P  ++         YVGNL W V    L   F   G VVSARV+ DR+   +R FGF++ SS++E  DA  +L+G    GR + V    +R
Sbjct:   89 NRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRV---------YVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.917e-16
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = -1
Query:  360 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 803
            N ET  SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ DR+   +R FGF++ SS+AE   A+ +L+G    GRTI V    +R
Sbjct:  131 NRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT---------YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.095e-15
Identity = 54/149 (36.24%), Postives = 77/149 (51.68%), Query Frame = -1
Query:  360 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 803
            N ET  SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR   A           VYE   ++YVGNL W V    L   F   G VV ARV++DR+   +R FGF++ S   E + A+S L+G +  GR I V    +R
Sbjct:  184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPR---------VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = -1
Query:  378 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM----NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 794
            TG SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:  124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = -1
Query:  378 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 794
            TG SRG G++TM S    + A    +G ++ GR +RV        R  ++    S     F  +S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:  124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13
Identity = 53/163 (32.52%), Postives = 78/163 (47.85%), Query Frame = -1
Query:  360 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 794
            TG SRG G++TM +    + A    +G ++ GR +RV        R                  R+  +     +     +S +++YVGNLSW V    L+  F   G VV A+V++DR    +R FGF+++SS  E  DA  SLNG D  GR+I V    +R
Sbjct:  124 TGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = -1
Query:  372 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 794
            +G SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V        +  FGF+SFSS+ E +AA+ +LN +   G+ I V +
Sbjct:  121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259          
BLAST of CX043587 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -1
Query:  360 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 605
            E  ++ +VG L+WA   EDL+  F +FG V+ +++++DR+   +R FGF++F  + A RDA   +NG +  GR I V E   R
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
The following BLAST results are available for this feature:
BLAST of CX043587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ROC5_NICSY9.573e-2038.7333 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY2.358e-1836.6731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL2.882e-1635.5728 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY4.917e-1634.9028 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.095e-1536.2431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICPL1.582e-1435.4230 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY3.524e-1436.4329 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_NICSY2.284e-1332.5229 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
RRP2_SPIOL7.347e-1234.2530S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
GRP8_ARATH3.646e-1138.55Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12B04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B04-C8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043587 ID=CX043587; Name=CX043587; organism=Citrus sinensis; type=EST; length=803bp
GCTCATGCCACCAAAATTGTCATTGATTATGAACACGGAAATGGCAAACT
GAAATCAAGCTTCACGATGAGGAATACAGCAACACTTAAAATCACAGACA
CTTAAATCAAACTAGTAAACCAAAATCAACCACTACCTGCAACACCTGCA
CCTCAGTATTTTTAACATAATGTTTACATATGAAAAAGCCTCAGGGACTT
CCCAGACACAAGATCTTGAATTCTGGTGGGCATTCGTACCCGCTATCCTG
CACCACCTTTCAGCCAAGGAGGATACTCCAAGCTAAGCAATTTCTTGTTA
CTAAAAGAAGTTTCTTCACTACAAACATGAACCGATCAAAACTGCAATCA
AGACTCAGTTCTGTCAACACCTTCTCTAACAATTATTGTCCGACCCCGAA
AGTCTGTTCCATTTAAAGAAAGTGCAGCATCACGTTCTGCGTCAGAAGAG
AAGGAAATAAACCCAAAAACTCGGGTGGTTTGTCCTTTACGATCGTGCAA
CACTCTAGCACTGACCACAGTCCCAAACCGGCCAAAATGATTTCTCAAAT
CCTCAGGTTTTACAGCCCAGGAAAGATTGCCAACATATAATTTATGAGGG
CTTTCATAGACAAAAATCTTCTTTGGTGGTGAAATCAATGCCTCAGCATT
CCTAGTCCGCGAATTCATATCAATTGAAAATCTCACCCGCATTTCACGTC
CACCCACATCAGATCCGTCCAATGCAATAATTGCATTTTTTGCTGAATTG
ATCGAACCCATTGTCAGGTAACCGCATCCACGACTTATGCCTGTTTCGGG
ATT
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