CX043586
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.021e-27 Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 +++ +EE R LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR+ F +SA+V++DR +R FGFI+FSS ++AL ++N + GR + Sbjct: 94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24 Identity = 69/193 (35.75%), Postives = 102/193 (52.85%), Query Frame = 2 Query: 251 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTI 826 +EV+ D EE + +L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+ + DV GR + V N R E PP+ +E +++YVGN+ W + L F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G GRTI Sbjct: 118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTI 301
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23 Identity = 68/190 (35.79%), Postives = 104/190 (54.74%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G++TM S + A +G ++ GR +RV R + + + ++S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22 Identity = 71/195 (36.41%), Postives = 102/195 (52.31%), Query Frame = 2 Query: 254 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTI 826 +V D+ VE + + P E L+V NLP D +L +F G V EV N ET SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E DA +L+G GR + Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAV 220
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22 Identity = 69/194 (35.57%), Postives = 104/194 (53.61%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 D D VEE R+ + +++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A +G ++ GR +RV NS R + + ++S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I Sbjct: 72 DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22 Identity = 65/191 (34.03%), Postives = 95/191 (49.74%), Query Frame = 2 Query: 257 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 V + EE + + +L+V NLP D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR + V + SR A P +++YVGN+ W + L F G VVSARV+ DR+ +R FGF++ SS+AE A+ +L+G GRTI Sbjct: 81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTI 262
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.552e-20 Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 2 Query: 239 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 826 +V V + + EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + GR I Sbjct: 131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19 Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 2 Query: 254 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTI 826 EV++D + + +S + +L+V NLP + D ++L ++F+ G V VEV + TG SRG G++TM S++ + A +G ++ GR +RV R + P+ F S +++YVGNLSW V L + F G VV ARV++DR ++ FGF+++ S E ++A SL+G D GR I Sbjct: 70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE---DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16 Identity = 60/177 (33.90%), Postives = 97/177 (54.80%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN + G+ I Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKI 255
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15 Identity = 59/180 (32.78%), Postives = 95/180 (52.78%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 793 D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+ + L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++ Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400 The following BLAST results are available for this feature:
BLAST of CX043586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043586 ID=CX043586; Name=CX043586; organism=Citrus sinensis; type=EST; length=831bpback to top |