CX043586

Overview
NameCX043586
Unique NameCX043586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3584 contig Csv1_Contig3584:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.021e-27
Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++DR    +R FGFI+FSS    ++AL ++N  +  GR +
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.332e-24
Identity = 69/193 (35.75%), Postives = 102/193 (52.85%), Query Frame = 2
Query:  251 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTI 826
            +EV+ D   EE +      +L+V NLP   D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF++ +S+AE  DA  +L+G    GRTI
Sbjct:  118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTI 301          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 68/190 (35.79%), Postives = 104/190 (54.74%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            D D  VEE R+ +   +++V NLP S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  +  +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I
Sbjct:   72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22
Identity = 71/195 (36.41%), Postives = 102/195 (52.31%), Query Frame = 2
Query:  254 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTI 826
            +V D+  VE  +  + P E   L+V NLP   D  +L  +F   G V   EV  N ET  SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R        P+  F  E   ++YVGNL W V    L   F   G VVSARV+ DR+   +R FGF++ SS++E  DA  +L+G    GR +
Sbjct:   35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAV 220          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22
Identity = 69/194 (35.57%), Postives = 104/194 (53.61%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            D D  VEE R+ +   +++V NL  S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I
Sbjct:   72 DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 65/191 (34.03%), Postives = 95/191 (49.74%), Query Frame = 2
Query:  257 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            V +    EE +  +   +L+V NLP   D   L ++F+  G V   EV  N ET  SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ DR+   +R FGF++ SS+AE   A+ +L+G    GRTI
Sbjct:   81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTI 262          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.552e-20
Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 2
Query:  239 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 826
            +V    V + +   EP   A+   L+V NL    +   L  +F+  GTV   EV  N ET  SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR         P +   VYE   ++YVGNL W V    L   F   G VV ARV++DR+   +R FGF++ S   E + A+S L+G +  GR I
Sbjct:  131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 2
Query:  254 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTI 826
            EV++D   +    + +S +   +L+V NLP + D ++L ++F+  G V  VEV  +  TG SRG G++TM S++  + A    +G ++ GR +RV        R    +     P+  F                S +++YVGNLSW V    L + F   G VV ARV++DR    ++ FGF+++ S  E ++A  SL+G D  GR I
Sbjct:   70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE---DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 60/177 (33.90%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            LYV N+PR+ +  EL  + +  G +   EV  +  +G SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V        +  FGF+SFSS+ E +AA+ +LN +   G+ I
Sbjct:   86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKI 255          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15
Identity = 59/180 (32.78%), Postives = 95/180 (52.78%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 793
            D +S  EE   +A    +YV NL    D ++  E+FKPFG V SV +  + E G SRG G++   +  SA NA+  ++  ++ G+++ V  +     R    + L    +  K+  Y+  + L+V NL  ++  E L   F  FGT+ SARV+ D  G+ ++ FGF+ FSS  E   A++
Sbjct:  226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVN-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400          
The following BLAST results are available for this feature:
BLAST of CX043586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ROC5_NICSY5.021e-2739.2933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY2.332e-2435.7531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY7.503e-2335.7929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_SPIOL4.863e-2236.4128 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_NICPL4.863e-2235.5730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY6.351e-2234.0328 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH4.552e-2034.5231 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH2.259e-1932.06Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RRP2_SPIOL1.049e-1633.9030S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
PABP_PICGU5.758e-1532.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12B04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B04-C8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043586 ID=CX043586; Name=CX043586; organism=Citrus sinensis; type=EST; length=831bp
CTTCTCAATGGCTGCCGCTACGGGCTTCTTAACAACTTCTTCCTCTCTGT
TCACAAAAATTACTCCTCCAGCTACACCAAAACGATTCGGTTTTACCTCT
CTGCCAACTTTAATTAATTTCCAGTACCCAAAGCTCTCATCTTGCTGGTC
CCGCTCTCACCCAGCTGGGTTTCGCTCAGTTCTTGCGGTGGTAGATGAGG
AAGCGGTAGTAGTTGAAGATGAGATTAACGGCAAGGATAATGTTGGTGGA
AACGAAGTGGACGACGACAGTTCAGTCGAAGAGCCAAGGAGCCGCGCAAG
GCCCTGTGAGTTATACGTGTGTAACTTGCCCAGGAGCTTTGACATTTCAG
AGCTTCTTGAGATGTTCAAGCCTTTTGGAACCGTTCTTTCCGTTGAGGTT
TCGAGGAATCCCGAAACAGGCATAAGTCGTGGATGCGGTTACCTGACAAT
GGGTTCGATCAATTCAGCAAAAAATGCAATTATTGCATTGGACGGATCTG
ATGTGGGTGGACGTGAAATGCGGGTGAGATTTTCAATTGATATGAATTCG
CGGACTAGGAATGCTGAGGCATTGATTTCACCACCAAAGAAGATTTTTGT
CTATGAAAGCCCTCATAAATTATATGTTGGCAATCTTTCCTGGGCTGTAA
AACCTGAGGATTTGAGAAATCATTTTGGCCGGTTTGGGACTGTGGTCAGT
GCTAGAGTGTTGCACGATCGTAAAGGACAAACCACCCGAGTTTTTGGGTT
TATTTCCTTCTCTTCTGACGCAGAACGTGATGCTGCACTTTCTTTAAATG
GAACAGACTTTCGGGGTCGGACAATAATTGT
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