DC900271
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_DANRE (Rhomboid family member 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.101e-13 Identity = 55/212 (25.94%), Postives = 86/212 (40.57%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + I LE+ G++RI +IY+LSG G++ S +F+ EL+ +W + P +DNFAHI P +G LD K Q +++LV + L AGL V + +C WC ++C+P + CE Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFISGFFLSFAFLPYISFGRLD-----------MYRKRCQIIIFLVVFLGLFAGLVVLFYV------HPIKCEWCELLTCIPFTDKFCE 848
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_MOUSE (Rhomboid family member 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.658e-12 Identity = 54/212 (25.47%), Postives = 83/212 (39.15%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G D K Q +++ V + L+AGL V RC WC +++C+P + CE Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFLSFAFLPYISFGKFD-----------LYRKRCQIIIFQVVFLGLLAGLVVLFYFY------PVRCEWCEFLTCIPFTDKFCE 847
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_HUMAN (Rhomboid family member 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.658e-12 Identity = 54/212 (25.47%), Postives = 84/212 (39.62%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G D K Q +++ V + L+AGL V + RC WC +++C+P + CE Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFD-----------LYRKRCQIIIFQVVFLGLLAGLVVLFYVY------PVRCEWCEFLTCIPFTDKFCE 846
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_PAPAN (Rhomboid family member 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.472e-12 Identity = 54/212 (25.47%), Postives = 83/212 (39.15%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G D K Q +++ V + L+AGL V RC WC +++C+P + CE Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFD-----------LYRKRCQIIIFQVVFLGLLAGLVVLFYFY------PVRCEWCEFLTCIPFTDKFCE 846
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_CALJA (Rhomboid family member 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.472e-12 Identity = 54/212 (25.47%), Postives = 84/212 (39.62%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G D K Q +++ V + L+AGL V + RC WC +++C+P + CE Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFD-----------LYRKRCQIIVFQVVFLGLLAGLVVLFYVY------PVRCEWCEFLTCIPFTDKFCE 846
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_BOVIN (Rhomboid family member 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.472e-12 Identity = 52/212 (24.53%), Postives = 84/212 (39.62%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAG++H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G K+ ++ ++ L+ GL LV+LF RC WC +++C+P + CE Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFG---------------KFDLYRKRCQIIVFQLVFLGLLAGLVVLFYFY--PVRCEWCEFLTCIPFTDKFCE 847
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_CALMO (Rhomboid family member 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.534e-12 Identity = 54/212 (25.47%), Postives = 83/212 (39.15%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G D K Q +++ V + L+AGL V RC WC +++C+P + CE Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFD-----------LYRKRCQIIVFQVVFLGLLAGLVVLFYFY------PVRCEWCEFLTCIPFTDKFCE 846
BLAST of DC900271 vs. ExPASy Swiss-Prot
Match: RHDF1_RAT (Rhomboid family member 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11 Identity = 53/212 (25.00%), Postives = 82/212 (38.68%), Query Frame = 2 Query: 8 QGWRLITCIWLHAGIIHLLVNMLCLVFIGIRLEQQFGFVRIGVIYLLSGFGGSVLSCLFIRNSIXXXXXXXXXXXXXXXXXELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE 643 Q +RL ++LHAGI+H LV++ + + LE+ G+ RI +IYLLSG G++ S +F+ EL +W + P +DNFAHI P +G D K Q +++ + L+AGL V RC WC +++C+P + CE Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFLSFAFLPYISFGKFD-----------LYRKRCQIIIFQAVFLGLLAGLVVLFYFY------PVRCEWCEFLTCIPFTDKFCE 847 The following BLAST results are available for this feature:
BLAST of DC900271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DC900271 ID=DC900271; Name=DC900271; organism=Citrus sinensis; type=EST; length=828bpback to top |