CX043559

Overview
NameCX043559
Unique NameCX043559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:279..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 427
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+                     N +   ++      P  M+DF+ A ++V  SVS+      E  +W E +G
Sbjct:  363 PWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS----LMAMRRRIEGLTPEEIRNLSRDDMH-----MPTTMEDFEMALKKVSKSVSASDIEKYE--KWIEEFG 490          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 2
Query:    8 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            RP D+D A++RR+P    V LP+A  RE+I+R+IL+ E L++ ++L+ IA+ ++GYSGSDLK LC  AA
Sbjct:  242 RPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAA 310          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  362 PWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  362 PWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  363 PWDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDAS 430          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+
Sbjct:  359 PWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 426          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 31/68 (45.59%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP+   RE+++R+ L +  LA D+DL+ IA   DGYSG+D+ N+C  A+
Sbjct:  387 PWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDAS 454          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 43/139 (30.94%), Postives = 77/139 (55.40%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 427
            P+D+DEA+ RRL +R+ + LP A  R +++R+ L + ELA+DVD+  IA  ++GYSG+D+ N+C  A+                     N +   ++      P  M+DF+ + ++V  SVS  ++++ +  +W E +G
Sbjct:  357 PWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS----LMAMRRRIEGLTPEEIRNISRAEMH-----MPTTMEDFESSLKKVSKSVS--ASDLEKYEKWIEEFG 484          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  362 PWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  362 PWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
The following BLAST results are available for this feature:
BLAST of CX043559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KTNA1_XENTR8.272e-1333.81Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
ATD1A_DANRE8.272e-1350.72ATPase family AAA domain-containing protein 1-A OS... [more]
KTNA1_MACFA4.105e-1248.53Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN4.105e-1248.53Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_CHICK4.105e-1248.53Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KTNA1_XENLA5.362e-1248.53Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_STRPU9.146e-1245.59Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KTNA1_SALSA1.560e-1130.94Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_RAT1.560e-1147.06Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MOUSE1.560e-1147.06Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11H07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H07-O13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043559 ID=CX043559; Name=CX043559; organism=Citrus sinensis; type=EST; length=670bp
CCCCCCTAGGCCTTTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAA
GGAGATTGATGGTTAACTTGCCAGATGCCCCAAACAGAGAAAAGATTATA
AGAGTTATCTTGGCCAAAGAAGAATTGGCATCTGATGTGGATTTGGAAGG
AATTGCAAACATGGCTGATGGGTACTCTGGAAGTGATCTAAAGAACCTGT
GTGTGACTGCCGCACATTGTCCCATACGGGAAATTTTGGAGAAGGAAAAG
AAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAGCTTCACCTCCATTGTA
CAGCAGCGTCGACGTTCGCCCTCTGAAGATGGACGATTTCAAATATGCAC
ATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTCTACAAATATGAATGAG
CTCCTTCAATGGAATGAACTATATGGAGAAGGTGGATCGAGGAAAAGGAA
ATCTCTGAGCTACTTTATGTAGAGGTGGTATCTCTTTTGTATAGCATTCT
TGTGTGGTTTATTCGTCTTTATCATCCTAAATGATGGCCAAGATCAGGGA
CCTGTATTTATGGAGAATTCTGTTGGGCTGTCCCTTTTTCATTGTAATAT
ATATAGGTTTTGGAAGCTTTTACCCTTTTGTTAGGAATTCTTTTTTATAT
TCATCAAGCAGGTTAACTTA
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