CX043555

Overview
NameCX043555
Unique NameCX043555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9158 contig Csv1_Contig9158:393..1199. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.116e-59
Identity = 108/176 (61.36%), Postives = 144/176 (81.82%), Query Frame = -1
Query:  280 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 807
            M EDNQQL++ KN+  K Q  +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKDQI+IIH+AR  +E+NFEK QQ++RE VKQS AN  + ED++ RAE++AKFI +QDKEMEEFV  R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS
Sbjct:  445 MREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620          
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.255e-51
Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = -1
Query:  274 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 807
            +SEDNQQL Y KN++ K+ +H+K LE +  I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD  ++ F D I+ IHE RD KEENFE LQQQER KV   +Q   NP + +D ++RAEE++ FI  Q+KEMEEFV  R+ LIK   +KM+ M++RH EE  +LEK FD  L QLM K+  H
Sbjct:  441 ISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621          
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.029e-45
Identity = 93/179 (51.96%), Postives = 129/179 (72.07%), Query Frame = -1
Query:  271 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 807
            MSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI  IH+A +EKE  FEKL Q+ER K +QS  +  +TED ++R E+I  FI  Q K++EEF A RD+LIKLH EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  422 MSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600          
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.107e-45
Identity = 92/179 (51.40%), Postives = 128/179 (71.51%), Query Frame = -1
Query:  271 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 807
            MSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F DQI  IH+  +EKE  FEKL Q+ER K +QS  +  +TED ++R E+I  FI  Q K++EEF A RD+LIKLH EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  422 MSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600          
BLAST of CX043555 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.591e-38
Identity = 82/184 (44.57%), Postives = 123/184 (66.85%), Query Frame = -1
Query:  256 MSEDNQQLLYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKRRAEEIAKFITVQDKEMEEFVAARDRLIKLHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 807
            MSEDNQQL YLKN++VK ++ SKA+E +  +V++KLRET+EEN  V+ + K +H + +EEM  QE++F   I  IH+A ++KE+ FEKL Q+ER K ++   +    +D + R E + KFI  Q K++ EF   RD LIK+H +K   +++ + + E+ELEK FDA LT LMEK+     E ++
Sbjct:  410 MSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593          
The following BLAST results are available for this feature:
BLAST of CX043555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SGS3_SOLLC8.116e-5961.36Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH1.255e-5156.91Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
SGS3_ORYSJ1.029e-4551.96Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ORYSI5.107e-4551.40Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_MAIZE1.591e-3844.57Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11H04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H04-O7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043555 ID=CX043555; Name=CX043555; organism=Citrus sinensis; type=EST; length=807bp
CCCCCCTTTTTTTTTTAAGATCTTTAAGCCACCAATATAAATTGGCGGTC
CATTTTTCATATTGCTATATTCAAATGTTTATACCTCTCTTGAGTTTGTA
ATTCGGAGAATATATCAAAAGAAAAGTCTTAACAGAGAATATATCAAAAG
AAAAGTCTTAAATATTCTCAGGATTGTATGATCAAATTCTATGCTGCTCA
TCAAGTTAGTATGCTATTTTTCTAACATCCTTACATCTCAGCATCAAACA
CTGTCGGCGGCAACCTCTGTTATATGAGTAGAGTACTTCTCCATCAATTG
AGTCAACTCAGCATCAAATCCTTTCTCAAGTTCAACCTCTTCCTCCCAAT
GCCTCCGCCTCATTGCATCCATCTTCTCACCGTGCAATTTTATCAGCCGG
TCCCTTGCTGCCACAAACTCTTCCATTTCTTTGTCTTGAACCGTTATGAA
CTTAGCAATTTCCTCTGCCCTGCGCTTGTAGTCCTCAGTGTTTTTAGGAT
TAGCAATTGATTGCTTAACCTTCTCTCGTTCCTGTTGTTGCAGCTTCTCA
AAATTCTCTTCCTTTTCATCCCTTGCTTCATGAATTATTCTAATCTGGTC
CTTGAAGAGTTGCTCTTGAAAATCCATCTCTTCTTTGTTCTGCTCATGTT
GCATTTTGGTTCTCTGTTTCACAATGCGGTTTTCCTCCATGGTCTCACGC
AGCTTCTCACTCACAATACTAAAAGTTGCTTCAAGAGCTTTTGAGTGCCT
TTGTTCTTTCACAACCCTATTCTTCAAATATAGGAGCTGTTGATTATCCT
CGCTCAT
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