CX043527

Overview
NameCX043527
Unique NameCX043527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:134..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043527 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.263e-35
Identity = 103/252 (40.87%), Postives = 135/252 (53.57%), Query Frame = 3
Query:  102 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRP-CDLPIARRNSLHRFLEKRKDRIVARAPY 833
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP  + S  D  V+++      +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVI FNDF A+KA E++ LAS G++                 NS A                   K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APY
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFP-CEASNMDSMVQDV------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTA-----------------NSLA-------------------KNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPY 226          
BLAST of CX043527 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.766e-33
Identity = 98/250 (39.20%), Postives = 130/250 (52.00%), Query Frame = 3
Query:  105 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPY 833
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S        + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+ F+DF A+KA E++ LA+ GS+ S           A+  N+ +A   K    S  PV         EP   + P                  P S  C+LPIARR SLHRFLEKRKDRI ++APY
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTC------FTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEP---IQPN-----------------PASLACELPIARRASLHRFLEKRKDRITSKAPY 228          
BLAST of CX043527 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.066e-21
Identity = 87/250 (34.80%), Postives = 120/250 (48.00%), Query Frame = 3
Query:   99 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVA--PRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPY 833
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   ++ +     R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+ FN+FP DKA EIM++A   + ++  +      +          +L KS V     V P     L EP+ S           GNN   E  Q         IARR SLHRF  KRKDR VARAPY
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHM----------NLDKSNV-----VIPD----LNEPTSS-----------GNNEDQETGQ--QHQVVERIARRASLHRFFAKRKDRAVARAPY 209          
BLAST of CX043527 vs. ExPASy Swiss-Prot
Match: TIF6B_ARATH (Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.076e-11
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 3
Query:  396 SLNKPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKS--PVESTPPVSPGPPKI--------LTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCD-------LPIARRNSLHRFLEKRKDRIVARAPY 833
            S +KP    AQ+TIFY G V  ++D   +KA  IM LA NGSS+     + P Q   Q  +   AS+  S  P    P +S   P+          T+ +  +    ++    G+N+   C  P S   +       LP+AR+ SL RFLEKRK+R+ + +PY
Sbjct:  168 SSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQ--VFSPPQTHQQVVHHTRASVDSSAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNI--NCPVPVSCSTNVMAPTVALPLARKASLARFLEKRKERVTSVSPY 326          
The following BLAST results are available for this feature:
BLAST of CX043527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH2.263e-3540.87Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH2.766e-3339.20Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH7.066e-2134.80Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TIF6B_ARATH5.076e-1133.13Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11F08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11F08-K15-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043527 ID=CX043527; Name=CX043527; organism=Citrus sinensis; type=EST; length=835bp
TGCAGCGCACTAGTTTTATTTTTGCTCGTGGGTTTCCGCTTCTGAGTTGG
TTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCC
GGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGA
AAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATT
GAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTAT
GAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGTTCGAA
ACATGGTGGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAGCAA
GCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTT
AAACAAGCCCGCGCCGCAAACTGCTCAAATGACTATATTTTATGGCGGAC
AAGTGATTGCGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATG
CAATTAGCAAGCAACGGGAGCTCACTGAGCCATGGTACCGCATATCCTCC
TATGCAACTGCCGGCCCAGGGTTACAACTCTTTTGCTGCTAGTTTACCCA
AAAGTCCAGTTGAATCAACTCCCCCGGTTTCTCCTGGCCCCCCAAAAATT
CTAACAGAGCCTAGTTGCTCGGTTCCTCCTCGATCAAATAGCATTCCTAA
CTTTGGCAACAATCTAATTCCAGAGTGCGCTCAACCTCCCTCAAGACCTT
GTGATCTACCAATTGCAAGGAGAAATTCACTCCACAGGTTCTTGGAGAAG
AGAAAAGACAGGATTGTTGCAAGAGCACCGTACCA
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