DC900242 | Citrus Genome Database

Overview


Name	DC900242
Unique Name	DC900242
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	384

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13843	contig	Csv1_Contig13843:79..462.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of DC900242 vs. ExPASy Swiss-Prot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.705e-34
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1

Query:    7 MGGGNGQKSKMAREKNMEKQRAAGKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCKEHAEARHPKSDLFTCFPHLKK 240
            MGGGN QKS MAR KN+EK +AAGKGSQLE+NKKAMSIQCKVCMQTFICTTSEVKC+EHAEA+HPK+D+  CFPHLKK
Sbjct:    1 MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78

The following BLAST results are available for this feature:

BLAST of DC900242 vs. ExPASy Swiss-Prot

BLAST of DC900242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
Y2309_ARATH	3.705e-34	83.33	Uncharacterized protein At2g23090 OS=Arabidopsis t...	[more]

Properties


Property Name	Value
Genbank description	DC900242 VSS Citrus sinensis cDNA clone VS28282 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900242 ID=DC900242; Name=DC900242; organism=Citrus sinensis; type=EST; length=384bp
AAGGAAATGGGAGGCGGCAACGGCCAGAAATCAAAGATGGCTCGTGAGAA
GAACATGGAGAAGCAGAGAGCAGCTGGCAAGGGGAGTCAGCTGGAGTCAA
ACAAGAAAGCCATGTCCATCCAGTGCAAGGTATGCATGCAGACGTTCATT
TGCACCACATCTGAGGTGAAGTGCAAGGAACATGCCGAAGCCAGACACCC
CAAATCTGATTTATTTACATGTTTCCCTCATTTAAAGAAATGAAAAACCA
ATAATTTGATTATGTATTTGGAGATGGGTTTAAAGCCCTCGTCAGTATGT
GTCTTGCTGTGGGTTAAAATTAGAAAGCTTTTGGGAGAAAGAGGAATCCT
TCCAGTCTTATCAATACTAATAATTAACTATTTG