DC900237

Overview
NameDC900237
Unique NameDC900237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12815 contig Csv1_Contig12815:53..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5G_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.234e-44
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 1
Query:  178 PALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRAVSNEAVLISKFISSV 432
            PA+ RNTRGHWNQAVQSLTLNVRK+ ++ DQ LFDECLA+FQEDE  E E   KRE+TWK LE+LAAS++VSNEAVL+ +F SSV
Sbjct:  428 PAMERNTRGHWNQAVQSLTLNVRKVMAETDQILFDECLAKFQEDEANETEVVAKREATWKLLEELAASKSVSNEAVLVPRFSSSV 512          

HSP 2 Score: 71.633 bits (174), Expect = 2.234e-44
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPSFXEKHKG 203
            ++ARCLNS H QVAERALFLW NDHIRNLI    KVI+PI+ P+     +G
Sbjct:  386 QIARCLNSSHFQVAERALFLWNNDHIRNLITQNHKVIMPIVFPAMERNTRG 436          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5Z_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.415e-42
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  178 PALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASR-AVSNEAVLISKFISSV 432
            PAL RNTRGHWNQAVQSLT+NVRK+  + DQ LFDECLA+FQ +EV + E + KRE TW+RLEDLA S+  V+NEAVL+ +F+SSV
Sbjct:  449 PALERNTRGHWNQAVQSLTINVRKVLCEIDQVLFDECLAKFQVEEVNKTEVKAKRERTWQRLEDLATSKTVVTNEAVLVPRFVSSV 534          

HSP 2 Score: 72.0182 bits (175), Expect = 3.415e-42
Identity = 33/62 (53.23%), Postives = 40/62 (64.52%), Query Frame = 3
Query:   18 QISTCRXLSPAKLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPSFXEKHKG 203
            +   C      ++ARCLNS H QVAERALFLW NDHIRNLI    KVI+PI+ P+     +G
Sbjct:  396 EFQRCMVPLSRQIARCLNSSHFQVAERALFLWNNDHIRNLITQNHKVIMPIVFPALERNTRG 457          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5N_ARATH (Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.698e-34
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  178 PALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRA 387
            PAL RN + HWNQAV SLTLNVRKIF D D  LF ECLA+F+EDE K  ET+ KRE+TWKRLE+L   +A
Sbjct:  440 PALERNAQKHWNQAVHSLTLNVRKIFHDLDPELFKECLAKFKEDESKAAETEAKREATWKRLEELGVRKA 509          

HSP 2 Score: 68.1662 bits (165), Expect = 1.698e-34
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPS 182
            ++ARCLNS H QVAERALFLW N+HI NLI   RKVILPII P+
Sbjct:  398 QIARCLNSLHFQVAERALFLWNNNHIENLIMQNRKVILPIIFPA 441          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5T_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 6.367e-34
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  178 PALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRAVSN 396
            PAL RNT+ HWNQAV SLTLNV+KIF+D D  LF +CLA+F+EDE KE E   KRE+TWKRLE++   +  S+
Sbjct:  419 PALERNTQKHWNQAVHSLTLNVQKIFNDIDAELFKDCLAKFREDESKEAEIGAKREATWKRLEEIGNQKQKSS 491          

HSP 2 Score: 69.707 bits (169), Expect = 6.367e-34
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPS 182
            ++ARCLNS H QVAERALFLW NDHI NLI   RKVILPII P+
Sbjct:  377 QVARCLNSLHFQVAERALFLWNNDHIENLIMQNRKVILPIIFPA 420          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5B_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.966e-26
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  178 PALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASR 384
            P L +N + HWNQAV  LT N++K+F + D  LF+EC  +++E + K KE +E+R+ TWKRL + AA R
Sbjct:  418 PTLEKNIQSHWNQAVHGLTTNIKKMFMEMDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAAER 486          

HSP 2 Score: 59.3066 bits (142), Expect = 3.966e-26
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPS 182
            ++ RCL S H QVAERALFLW N+HI  LI   R VILPII P+
Sbjct:  376 QIGRCLTSSHFQVAERALFLWNNEHIVGLIAQNRSVILPIIYPT 419          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5I_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.250e-25
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  181 ALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRAVSNE-AVLISKFISSV 432
            AL +N + HWNQ+V +LTLNVRK+F + D+ALF  C ARF+EDE K+    EKR+  W RLE+ A+ + ++ + AVL++   +S+
Sbjct:  414 ALEKNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLENAASMKPITGKTAVLVTPRATSI 498          

HSP 2 Score: 51.9878 bits (123), Expect = 4.250e-25
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPII 173
            ++A C+ S H QV+ERALFLW ND I NLI   R+ ILPI+
Sbjct:  371 RIACCVTSSHFQVSERALFLWNNDQIVNLIGHNRQAILPIM 411          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5E_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.687e-24
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  181 ALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRA 387
            AL RN +GHWNQAV  L+ NVR++F + D  LF+EC  ++ E+E K  E  E+RE TWKRLE+ A+  A
Sbjct:  428 ALERNMKGHWNQAVHGLSENVRRMFLEMDTELFEECEKQYLENEAKACELLEQRELTWKRLEEAASLAA 496          

HSP 2 Score: 57.3806 bits (137), Expect = 2.687e-24
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPSFXEKHKG 203
            ++ +CLNS H QVAERALFLW N+HI  LI   + VI PII  +     KG
Sbjct:  385 QIGKCLNSAHFQVAERALFLWNNEHIVGLIAQNKDVIFPIIFEALERNMKG 435          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5A_ARATH (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.145e-21
Identity = 25/68 (36.76%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  181 ALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASR 384
            +L +N   HWNQAV  L+ N++++F + D  LF+EC  +++E + K K+ +E+R++ W+RL++    R
Sbjct:  419 SLEKNIESHWNQAVHGLSANIKRMFMEMDPELFEECQQQYEEKQAKSKQVEEQRQNRWRRLDEAVEER 486          

HSP 2 Score: 55.4546 bits (132), Expect = 1.145e-21
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPS 182
            ++ARCL+S + QVAERALFLW N+H+  LI   R VILPII  S
Sbjct:  376 QIARCLSSSNFQVAERALFLWNNEHVVGLIAQNRGVILPIIFAS 419          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5E_MOUSE (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Mus musculus GN=Ppp2r5e PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 6.299e-19
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  181 ALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRAVSNEAVL 408
            +L R ++ HWN A+ +L  NV K F + +  +FDE  A ++ D  +EK+ +++RE  WK+LEDL   R +  + ++
Sbjct:  390 SLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQREKKKEKEREELWKKLEDLELKRGLRRDGII 465          

HSP 2 Score: 49.6766 bits (117), Expect = 6.299e-19
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPS 182
            ++A+C++S H QVAERAL+ W N++I +LI     VILPI+  S
Sbjct:  347 QIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSS 390          
BLAST of DC900237 vs. ExPASy Swiss-Prot
Match: 2A5E_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform OS=Homo sapiens GN=PPP2R5E PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.299e-19
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  181 ALXRNTRGHWNQAVQSLTLNVRKIFSDADQALFDECLARFQEDEVKEKETQEKRESTWKRLEDLAASRAVSNEAVL 408
            +L R ++ HWN A+ +L  NV K F + +  +FDE  A ++ D  +EK+ +++RE  WK+LEDL   R +  + ++
Sbjct:  390 SLYRISKEHWNPAIVALVYNVLKAFMEMNSTMFDELTATYKSDRQREKKKEKEREELWKKLEDLELKRGLRRDGII 465          

HSP 2 Score: 49.6766 bits (117), Expect = 6.299e-19
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 3
Query:   51 KLARCLNSXHXQVAERALFLWTNDHIRNLINLXRKVILPIIXPS 182
            ++A+C++S H QVAERAL+ W N++I +LI     VILPI+  S
Sbjct:  347 QIAKCVSSPHFQVAERALYYWNNEYIMSLIEENSNVILPIMFSS 390          
The following BLAST results are available for this feature:
BLAST of DC900237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
2A5G_ARATH2.234e-4471.76Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5Z_ARATH3.415e-4267.44Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5N_ARATH1.698e-3467.14Serine/threonine protein phosphatase 2A 59 kDa reg... [more]
2A5T_ARATH6.367e-3461.64Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5B_ARATH3.966e-2647.83Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5I_ARATH4.250e-2547.06Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5E_ARATH2.687e-2452.17Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5A_ARATH1.145e-2136.76Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
2A5E_MOUSE6.299e-1935.53Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5E_HUMAN6.299e-1935.53Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionDC900237 VSS Citrus sinensis cDNA clone VS28276 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900237 ID=DC900237; Name=DC900237; organism=Citrus sinensis; type=EST; length=847bp
TAAAACTACCCAGGCTGCAAATTTCAACGTGCAGGNGCCTTTCTCCCGCC
AAATTGGCCCGCTGCCTCAACAGCTNTCATTTNCAGGTTGCTGAACGCGC
ATTGTTTTTGTGGACCAATGATCACATAAGGAATCTGATCAACTTAANCC
GGAAAGTGATACTGCCCATAATCTTNCCCAGCTTTGNAGAGAAACACAAG
GGGTCACTGGAATCAAGCTGTTCAAAGTCTGACACTGAATGTCAGGAAGA
TTTTTTCGGATGCCGATCAAGCTCTATTTGATGAGTGCTTGGCCAGATTC
CAAGAGGACGAAGTGAAGGAGAAGGAGACACAGGAGAAGCGAGAATCAAC
CTGGAAACGCTTGGAAGATTTGGCTGCCTCCAGAGCTGTAAGTAATGAGG
CTGTGCTCATCTCAAAGTTTATCTCCTCTGTTGCTGTTGCCCCTAGCACC
AGCCCGCGGGCTACTGCCAGTAGTTGAGAGCTGCATGCNCATTGAGAAGA
GCTTAGAATAAGCAGCCAAGGTGGAATGTTAAAGGGAGTAACCCAAATGG
TGCCATACAGGAATTGTTTGGTCTCACTTCCCTTGGGTCCTACTATGCAA
ATCTACCAGCTAAATGATTAAAGTGAAGATGGAGTTATGTGGATATTGAG
GTGTCTCCTTTCATTGGGTTCTCGGCTTATTCCTTAATTGTTTGTTATCC
CTGTTCCTCTCCTGTCATGGAGGTGTTTGTGTATCATAAGGATAAGGGAT
TTGGTTTATACAGGTCTTTGGATTTCTTACCTGATAATTATTTATTTTAT
GTAATGATGCAAATATGTTCCTTTTAGTCTAAGTTGCGTTTACTTTC
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