DC900232

Overview
NameDC900232
Unique NameDC900232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900232_ssr135 microsatellite DC900232_ssr135:135..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6506 contig Csv1_Contig6506:1..385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900232 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 QDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIMLKHASXXXXXXXXRRD 157
            Q+IIEKAH GD+DYVKH+LTLFTDFVAVFVRILIIMLK+++        RR+
Sbjct:  196 QEIIEKAHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKNSADKEEKKKKRRN 247          
BLAST of DC900232 vs. ExPASy Swiss-Prot
Match: BI1_ORYSJ (Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 2
Query:    2 QDIIEKAHFGDLDYVKHALTLFTDFVAVFVRILIIMLKHAS 124
            Q+IIE+AH GD+DY+KHALTLFTDFVAV VRIL+IMLK+AS
Sbjct:  197 QEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIMLKNAS 237          
The following BLAST results are available for this feature:
BLAST of DC900232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BI1_ARATH2.081e-1369.23Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
BI1_ORYSJ1.033e-1280.49Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN... [more]
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Properties
Property NameValue
Genbank descriptionDC900232 VSS Citrus sinensis cDNA clone VS28272 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900232 ID=DC900232; Name=DC900232; organism=Citrus sinensis; type=EST; length=397bp
CCAGGATATAATTGAGAAAGCTCACTTTGGAGACTTGGATTATGTCAAGC
ATGCCCTGACTCTTTTCACTGACTTTGTTGCTGTCTTTGTTCGTATTCTC
ATAATCATGTTGAAGCATGCATCTGAGAAAGAGGAGAAGAAGAAGAAGAG
GAGAGACTGAATCTCTCGGTAGCTGGACGGACAGTGCTTGTTTAAGTAAG
GGTTGCAGAACAACTAAATTTGTTGTGTATATTCTTGTGCTTACTTCTCT
TCTCCAAGCTGCACCTCTCTTAACAATCAGATGTAATACATGGGGTTAGT
TGTGTTCGCTAATTTTTGCTATTTTGCTGCTTGACAATGGCCGGTGGGTT
CTGAAACGACATTTTAATAAAATTCACTGTTTGCTGTTTACTATGGT
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