DC900230
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 1.512e-57 Identity = 126/203 (62.07%), Postives = 133/203 (65.52%), Query Frame = 1 Query: 157 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRQQARPVPQKQ 762 M RLFGKPKQE NAL TLD AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+GAAADFD GRQ ARPVPQK+ Sbjct: 1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATTAPPLPSVPVPAGRQPARPVPQKR 203
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 7.767e-54 Identity = 113/151 (74.83%), Postives = 118/151 (78.15%), Query Frame = 1 Query: 166 RLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 RLFGKPKQET+ L TLD AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G A DFD Sbjct: 5 RLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFD 154
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.340e-13 Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1 Query: 316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I EQ E ++I +A+S P+G +FD Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVGFGEEFD 158
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.286e-13 Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1 Query: 295 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 597 AK ++ NK A LK+K+LYE Q+++L + + Q+ +E A ET+ A++ GAS MK + K ++D VD TMDEI EQ E ++I EA+S P+ Sbjct: 48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.286e-13 Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 Query: 316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MK + +ID VD M +I EQ E ++I +A+S P+G +FD Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFGEEFD 158
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.986e-13 Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1 Query: 316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +I+ VD+ M +I +Q E ++I +A+S P+G DFD Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFD 158
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.986e-13 Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1 Query: 316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +I+ VD+ M +I +Q E ++I +A+S P+G DFD Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFD 158
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.900e-13 Identity = 35/100 (35.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 319 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 NKR A+ LKRK+++E ++ ++ + I Q+ ++ A ET+ A+R GA MK++Q+ + D VD+ MD+I +Q ++I +STP+G A+ D Sbjct: 56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEID 155
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 5.093e-13 Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I EQ E +I A+S P+G +FD Sbjct: 62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVGFGEEFD 162
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 6.652e-13 Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 Query: 316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I +Q E ++I A+S P+G +FD Sbjct: 60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFD 160 The following BLAST results are available for this feature:
BLAST of DC900230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC900230 ID=DC900230; Name=DC900230; organism=Citrus sinensis; type=EST; length=1151bpback to top |