DC900230

Overview
NameDC900230
Unique NameDC900230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1151
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:1..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.512e-57
Identity = 126/203 (62.07%), Postives = 133/203 (65.52%), Query Frame = 1
Query:  157 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRQQARPVPQKQ 762
            M  RLFGKPKQE NAL TLD                          AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+GAAADFD                                     GRQ ARPVPQK+
Sbjct:    1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDELAAELDELESEELESQLLQPATTAPPLPSVPVPAGRQPARPVPQKR 203          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 7.767e-54
Identity = 113/151 (74.83%), Postives = 118/151 (78.15%), Query Frame = 1
Query:  166 RLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            RLFGKPKQET+ L TLD                          AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G A DFD
Sbjct:    5 RLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFD 154          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.340e-13
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S P+G   +FD
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVGFGEEFD 158          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.286e-13
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  295 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 597
            AK   ++ NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.286e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S P+G   +FD
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFGEEFD 158          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.986e-13
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G   DFD
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFD 158          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.986e-13
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G   DFD
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFD 158          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.900e-13
Identity = 35/100 (35.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  319 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D VD+ MD+I +Q    ++I   +STP+G  A+ D
Sbjct:   56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEID 155          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.093e-13
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+G   +FD
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVGFGEEFD 162          
BLAST of DC900230 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.652e-13
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  316 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFD 618
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G   +FD
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFD 160          
The following BLAST results are available for this feature:
BLAST of DC900230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VP322_ARATH1.512e-5762.07Vacuolar protein sorting-associated protein 32 hom... [more]
VP321_ARATH7.767e-5474.83Vacuolar protein sorting-associated protein 32 hom... [more]
CHM4B_DANRE1.340e-1341.58Charged multivesicular body protein 4b OS=Danio re... [more]
SNF7_KLULA2.286e-1340.59Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
CHM4C_DANRE2.286e-1340.59Charged multivesicular body protein 4c OS=Danio re... [more]
CHM4B_XENTR2.986e-1340.59Charged multivesicular body protein 4b OS=Xenopus ... [more]
CHM4B_XENLA2.986e-1340.59Charged multivesicular body protein 4b OS=Xenopus ... [more]
SNF7_SCHPO3.900e-1335.00Vacuolar-sorting protein snf7 OS=Schizosaccharomyc... [more]
CHM4B_CHICK5.093e-1341.58Charged multivesicular body protein 4b OS=Gallus g... [more]
CHM4B_MOUSE6.652e-1340.59Charged multivesicular body protein 4b OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionDC900230 VSS Citrus sinensis cDNA clone VS28269 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900230 ID=DC900230; Name=DC900230; organism=Citrus sinensis; type=EST; length=1151bp
CGCAGACCGAGCCACGCTCTCTCCCTCTCATATAATTCACAGATCTCTAC
CGATTGTATCTTTTAATAAAGTCAGAATCCCTTTTTTTTTTTTCCCTCAT
TTTTATAATTACAGAGGTAAAATCGAGGGTTTTTGATTAATCGCGGAGAA
TCAAACATGTTTACTCGGCTTTTTGGAAAACCTAAACAGGAAACCAATGC
CTTAACCACGCTCGATAAGCTAAATGAAACTCTTGAAATGCTAGAGAAAA
AGGAGAAAGTACTCCTGAAAAAGGCTTCTGTAGAGGTTGAAAAGGCCAAG
GACTACTCCAAAGCAAAGAACAAAAGAGCGGCCATACAATGTTTGAAGAG
GAAGAGGCTATACGAACAGCAAATAGAGCAGCTTGGGAATTTCCAATTGC
GCATTCATGATCAGATGATAATGCTAGAAGGTGCTAAAGCCACAACTGAG
ACTGTAGATGCATTGAGGACGGGAGCATCGACAATGAAGGCTATGCAGAA
AGCAACGAACATAGATGATGTGGATAAGACCATGGATGAGATCAATGAGC
AGACCGAGAACATGAAGCAGATTCAAGAAGCATTATCAACTCCTATTGGT
GCTGCTGCTGATTTCGATGAGGATGAATTGGAAGCAGAACTTGAAGAACT
GGAAGGGTCTGAGTTGGAAGAGCAGCTTCTACAGCCAGCTACAACAGCTC
CTGCTGCTCCGGTTCAGGTCCCTGCTGGCAGGCAACAAGCCCGTCCTGTT
CCCCAAAAGCAGCGAACAGCTGAGGAAGATGAGCTTGCTGCTTTACAAGC
TGAGATGGCTCTTTAAGCAGGTTTTACCGCCATAATGAAGATATTATTTA
AATAGCTGGCCGTATAATGTGGAGATTTATGCCTACTTGGATTACCTTCA
AGATTTCTGTGTGCATTCAATGAACAGACTGTATATAAAGTTTGCGTAAA
CTAGTCCTGTTTGAAATATGTATCCTGTATTCTGTCTTATAGACCTTTTA
ATTGAGTTCATCATCTTTGATGTGTTTTTTCCTTCTCCTGTGAAAATTTT
ATGTTCGTTGAGCTCTTGGTAGCAACTTCACATCTCATGAAGAAGTACTG
CCAGGTTATGGTGTGAAACTCTTTAGGCATACTAATAAATGAACAAATTG
T
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