DC900225

Overview
NameDC900225
Unique NameDC900225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.123e-53
Identity = 96/115 (83.48%), Postives = 107/115 (93.04%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LYVFKWTSLLIPPTTVL++NLVG+VAG+S+AINSGYQSWGPLFGKLFF+IWVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWV++DPF S   KA + GQCG+NC
Sbjct:  962 FAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.123e-53
Identity = 96/115 (83.48%), Postives = 107/115 (93.04%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LYVFKWTSLLIPPTTVL++NLVG+VAG+S+AINSGYQSWGPLFGKLFF+IWVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWV++DPF S   KA + GQCG+NC
Sbjct:  962 FAELYVFKWTSLLIPPTTVLVINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGRQNRTPTIVIVWSILLASIFSLLWVKIDPFISPTQKAVALGQCGVNC 1076          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.475e-50
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LY+FKWT+LLIPPTT+LIVNLVG+VAGVS+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VWS+LLASIFSLLWVR+DPFTS  T  +   +CGINC
Sbjct:  952 FAELYLFKWTTLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDIL-ECGINC 1065          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.475e-50
Identity = 91/115 (79.13%), Postives = 106/115 (92.17%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LY+FKWT+LLIPPTT+LI+NLVG+VAG+S+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++  +CGINC
Sbjct:  960 FAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-KCGINC 1073          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.475e-50
Identity = 91/115 (79.13%), Postives = 106/115 (92.17%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LY+FKWT+LLIPPTT+LI+NLVG+VAG+S+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++  +CGINC
Sbjct:  960 FAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-KCGINC 1073          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.221e-50
Identity = 91/115 (79.13%), Postives = 105/115 (91.30%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LY+FKWT+LLIPPTT+LI+NLVG+VAG+S+AINSGYQSWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV+VW+ILLASIFSLLWVR+DPFT+  T  ++   CGINC
Sbjct:  968 FAELYMFKWTTLLIPPTTILIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDPFTTRVTGPDTQ-TCGINC 1081          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.200e-50
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANS-NGQCGI 485
            FA LY+FKWT+LLIPPTTVL+VNL+GIVAGVS+A+NSGYQSWGPLFGKLFFA+WVIAHLYPFLKGLLGRQNRTPTIVIVWS+LLASIFSLLWVR++PF   +  AN+ NG+ G+
Sbjct:  967 FAELYIFKWTALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNANNFNGKGGV 1080          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.316e-48
Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F  LY FKWT+LLIPPTTVLI+N+VG+VAG+S AIN+GYQSWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPF    TK     +CGINC
Sbjct:  913 FGELYAFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVL-KTKGPDTSKCGINC 1026          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.451e-47
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS 446
            FA LYVFKWTSLLIPPTT+L+VNLVGIVAGVS+AINSGYQSWGPL GKL FA WV+AHLYPFLKGLLGRQNRTPTIVIVWS LLASIFSLLWVR++PF S
Sbjct:  954 FAELYVFKWTSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.168e-46
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LY FKWT+LLIPPTT+LI+N++G+VAGVS AIN+G ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  942 FAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055          
The following BLAST results are available for this feature:
BLAST of DC900225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA1_ORYSJ3.123e-5383.48Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI3.123e-5383.48Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA3_ARATH2.475e-5081.74Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ2.475e-5079.13Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI2.475e-5079.13Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ORYSJ4.221e-5079.13Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA1_ARATH7.200e-5080.70Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA7_ARATH2.316e-4875.65Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESAA_ARATH7.451e-4788.00Probable cellulose synthase A catalytic subunit 10... [more]
CESA9_ORYSJ2.168e-4673.91Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionDC900225 VSS Citrus sinensis cDNA clone VS28263 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900225 ID=DC900225; Name=DC900225; organism=Citrus sinensis; type=EST; length=830bp
CGGAATAATGATGGGTGTATTAGACGGNGAGAATAACAGTTTGGTCATGG
TGAACACGGCCCATCTATTGCTGTTTCCAAGTCTCTNAAAGGCCTGCTGG
ATTANACCAACTTACTGCACTTCAAAGGCTCTGATGATGATGNAGATTTG
CANAGCTTTATGTATTCAAATGGACATCTCTTCTCATCCCTCCAACTACA
GTCCTGATTGTGAACTTGGTGGGTATTGTAGCTGGTGTATCATGGGCCAT
AAACAGTGGTTACCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTG
CCATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGT
CGTCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGC
TTCCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATG
ACACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATG
TTGGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCAT
CAGTGTATATAAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAAT
TTACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTC
ATTTGTCGTGGAGCCTACTAAGGAGNANNTGAGGCTTTAGTAAAACCCTT
TTTGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCATAC
AGATGCTTGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTG
TGAAGCTCCATTTTCTCAAGTTCAGAGCGC
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