DC900224

Overview
NameDC900224
Unique NameDC900224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig440 contig Csv1_Contig440:730..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 2.900e-122
Identity = 206/224 (91.96%), Postives = 217/224 (96.88%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            PIFNMEDIEEG+EGY+DERS+LMSQK LEKRFGQSP+FIA+TFM QGGIPP+TNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRP FKGSAPINLSDRLNQVLRWALGS+EILLSRHCPIWYGYNGRLKLLERLAYINTIVYP+TSIPLIAYC LPA CLLTNKFIIPEISN+A M+FILLF SIFATGILE+RWSG
Sbjct:  686 PIFNMEDIEEGIEGYEDERSVLMSQKRLEKRFGQSPIFIASTFMTQGGIPPSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSG 909          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 2.900e-122
Identity = 206/224 (91.96%), Postives = 217/224 (96.88%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            PIFNMEDIEEG+EGY+DERS+LMSQK LEKRFGQSP+FIA+TFM QGGIPP+TNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRP FKGSAPINLSDRLNQVLRWALGS+EILLSRHCPIWYGYNGRLKLLERLAYINTIVYP+TSIPLIAYC LPA CLLTNKFIIPEISN+A M+FILLF SIFATGILE+RWSG
Sbjct:  686 PIFNMEDIEEGIEGYEDERSVLMSQKRLEKRFGQSPIFIASTFMTQGGIPPSTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSG 909          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 434.491 bits (1116), Expect = 2.455e-121
Identity = 203/224 (90.62%), Postives = 219/224 (97.77%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            P+FNMEDI+EG EGYDDERS+LMSQ+S+EKRFGQSPVFIAATFMEQGGIPPTTNPA+LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYC PPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGY+GRL+LLER+AYINTIVYP+TSIPLIAYC LPAFCL+T++FIIPEISN+AS+WFILLFISI  TGILE+RWSG
Sbjct:  691 PLFNMEDIDEGFEGYDDERSILMSQRSVEKRFGQSPVFIAATFMEQGGIPPTTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCNPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYHGRLRLLERIAYINTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSG 914          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 2.461e-113
Identity = 192/223 (86.10%), Postives = 210/223 (94.17%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWS 669
            P+FNMEDI+E VEGY+DE SLL+SQK LEKRFGQSPVFIAATFMEQGG+P TTNP +LLKEAIHVISCGYE KT+WGKEIGWIYGSVTEDILTGFKMHARGWISIYC+P RPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLER+AYINTIVYP+TSIPL+AYC LPAFCL+TN FIIPEISN AS+ F+LLF SI+A+ ILE++WS
Sbjct:  678 PLFNMEDIDEDVEGYEDEMSLLVSQKRLEKRFGQSPVFIAATFMEQGGLPSTTNPLTLLKEAIHVISCGYEAKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCVPSRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWS 900          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.493e-110
Identity = 189/226 (83.63%), Postives = 202/226 (89.38%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEG--YDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            P+FN+EDIEEGVEG  +DDE+SLLMSQ SLEKRFGQS  F+A+T ME GG+P +  P SLLKEAIHVISCGYEDKTEWG EIGWIYGSVTEDILTGFKMHARGW SIYCMP RPAFKGSAPINLSDRLNQVLRWALGS+EIL SRHCPIWYGY GRLK LER AYINT +YPLTSIPL+ YC LPA CLLT KFIIPEISNFAS+WFI LFISIFATGILE+RWSG
Sbjct:  690 PVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAAFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRWSG 915          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 9.676e-110
Identity = 186/226 (82.30%), Postives = 203/226 (89.82%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEG--YDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            P+FN+EDIEEG+EG  +DDE+SLLMSQ SLEKRFGQS VF+A+T ME GG+P +  P SLLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHARGW SIYCMP RPAFKGSAPINLSDRLNQVLRWALGS+EIL SRHCPIWYGY GRLK LER AYINT +YPLTSIPL+ YC LPA CLLT KFIIPEISNFAS+WFI LF+SIFATGILE+RWSG
Sbjct:  682 PVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQSSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSG 907          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 9.676e-110
Identity = 186/226 (82.30%), Postives = 203/226 (89.82%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEG--YDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            P+FN+EDIEEG+EG  +DDE+SLLMSQ SLEKRFGQS VF+A+T ME GG+P +  P SLLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHARGW SIYCMP RPAFKGSAPINLSDRLNQVLRWALGS+EIL SRHCPIWYGY GRLK LER AYINT +YPLTSIPL+ YC LPA CLLT KFIIPEISNFAS+WFI LF+SIFATGILE+RWSG
Sbjct:  682 PVFNLEDIEEGIEGSGFDDEKSLLMSQMSLEKRFGQSSVFVASTLMEYGGVPQSATPESLLKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSG 907          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 391.734 bits (1005), Expect = 1.825e-108
Identity = 180/226 (79.65%), Postives = 204/226 (90.27%), Query Frame = 1
Query:    1 PIFNMEDIEEGVEG--YDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            P+FN++DIEEGVEG  +DDE++LLMSQ SLEKRFGQS VF+A+T ME GG+PP+  P +LLKEAIHVISCGYEDK++WG EIGWIYGSVTEDILTGFKMHARGW SIYCMP  PAFKGSAPINLSDRLNQVLRWALGS+EIL SRHCPIWYGYNGRLK LER AY+NT +YP+TSIPL+ YCTLPA CL TN+FIIP+ISN AS+WF+ LF+SIFATGILE+RWSG
Sbjct:  674 PVFNLDDIEEGVEGAGFDDEKALLMSQMSLEKRFGQSAVFVASTLMENGGVPPSATPENLLKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRWSG 899          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 7.176e-105
Identity = 175/224 (78.12%), Postives = 201/224 (89.73%), Query Frame = 1
Query:    4 IFNMEDIEEGVEGYDD-ERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            IF++EDIEEG+EGYD+ E+S LMSQK+ EKRFG SPVFIA+T ME GG+P  TN +SL+KEAIHVISCGYE+KTEWGKEIGWIYGSVTEDILTGF+MH RGW S+YCMP RPAFKGSAPINLSDRL+QVLRWALGS+EI  SRHCP+WY + G+LK+LERLAYINTIVYP TSIPL+AYCT+PA CLLT KFIIP I+NFAS+WF+ LF+SI AT ILE+RWSG
Sbjct:  659 IFDLEDIEEGLEGYDELEKSSLMSQKNFEKRFGMSPVFIASTLMENGGLPEATNTSSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFRMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYAWGGKLKILERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSG 882          
BLAST of DC900224 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 3.685e-101
Identity = 172/225 (76.44%), Postives = 196/225 (87.11%), Query Frame = 1
Query:    7 FNMEDIEEGVEGYDD-ERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP--TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSG 672
            F +E+IEEG+EGYD+ ERS LMSQKS EKRFGQSPVFIA+T +E GG+P     +PA+L+KEAIHVISCGYE+KTEWGKEIGWIYGSVTEDILTGFKMH RGW S+YC P R AFKGSAPINLSDRL+QVLRWALGS+EI +SRHCP+WY Y GRLK LER AY NTIVYP TSIPL+AYCT+PA CLLT KFIIP ++N AS+WFI LF+SI ATG+LE+RWSG
Sbjct:  672 FELEEIEEGLEGYDELERSSLMSQKSFEKRFGQSPVFIASTLVEDGGLPQGAAADPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCTPARAAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSG 896          
The following BLAST results are available for this feature:
BLAST of DC900224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA1_ORYSJ2.900e-12291.96Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI2.900e-12291.96Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ARATH2.455e-12190.63Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESAA_ARATH2.461e-11386.10Probable cellulose synthase A catalytic subunit 10... [more]
CESA8_ORYSJ1.493e-11083.63Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ORYSJ9.676e-11082.30Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI9.676e-11082.30Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA3_ARATH1.825e-10879.65Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA4_ARATH7.176e-10578.13Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ3.685e-10176.44Cellulose synthase A catalytic subunit 7 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionDC900224 VSS Citrus sinensis cDNA clone VS28263 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900224 ID=DC900224; Name=DC900224; organism=Citrus sinensis; type=EST; length=676bp
CCCATTTTCAATATGGAAGACATTGAGGAGGGCGTTGAAGGATATGATGA
CGAGAGATCACTGCTGATGTCGCAGAAGAGTTTAGAGAAGCGTTTTGGTC
AATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAGGCATTCCA
CCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCATGTTATTAG
TTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGGATGGATCT
ATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGCATGCTCGT
GGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTTAAGGGGTC
TGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCGATGGGCCT
TGGGGTCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATATGGTATGGC
TACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATTAACACTAT
TGTCTACCCACTGACCTCCATCCCACTAATTGCTTACTGCACGCTTCCTG
CTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAAGCAACTTT
GCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCTACTGGAAT
ACTGGAGATTAGATGGAGTGGGGGTG
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