DC900218

Overview
NameDC900218
Unique NameDC900218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:50..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 7.038e-77
Identity = 144/181 (79.56%), Postives = 147/181 (81.22%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGLTF KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNNIANKA
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 285.419 bits (729), Expect = 2.674e-76
Identity = 143/181 (79.01%), Postives = 147/181 (81.22%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGLTF KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNNIA+KA
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 3.493e-76
Identity = 143/181 (79.01%), Postives = 146/181 (80.66%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL+F KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNNIA KA
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 3.493e-76
Identity = 143/181 (79.01%), Postives = 147/181 (81.22%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL+F KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNNIA+KA
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 283.878 bits (725), Expect = 7.781e-76
Identity = 142/181 (78.45%), Postives = 147/181 (81.22%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL+F KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGL+WLSNNIA+KA
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.957e-75
Identity = 141/181 (77.90%), Postives = 146/181 (80.66%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL+F KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNNIA+K+
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 1.124e-74
Identity = 141/181 (77.90%), Postives = 145/181 (80.11%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL+F KLFSRLFA K+                             PTIGFNV TVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYI STCATSGEGLYEGLDWLSNNIANKA
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.468e-74
Identity = 140/181 (77.35%), Postives = 146/181 (80.66%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGLTF KLFSRLFA K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYI STCAT+GEGLYEGLDWLS+NIA K+
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.512e-74
Identity = 138/180 (76.67%), Postives = 142/180 (78.89%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANK 579
            MGL F K  SRLF  K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+VEARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNN+ANK
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of DC900218 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 1.242e-73
Identity = 138/181 (76.24%), Postives = 144/181 (79.56%), Query Frame = 1
Query:   40 MGLTFPKLFSRLFAXKKXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPTIGFNVXTVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRXAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIXSTCATSGEGLYEGLDWLSNNIANKA 582
            MGL+F KL  RLF+ K+                             PTIGFNV TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EARDELHRMLNEDELR AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI STCATSGEGLYEGLDWLSNNI++KA
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
The following BLAST results are available for this feature:
BLAST of DC900218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF2_ORYSJ7.038e-7779.56ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ2.674e-7679.01ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF2_ARATH3.493e-7679.01ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH3.493e-7679.01ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN7.781e-7678.45ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA2.957e-7577.90ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_CATRO1.124e-7477.90ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE1.468e-7477.35ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_CHLRE9.512e-7476.67ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_SALBA1.242e-7376.24ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]

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Properties
Property NameValue
Genbank descriptionDC900218 VSS Citrus sinensis cDNA clone VS28257 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900218 ID=DC900218; Name=DC900218; organism=Citrus sinensis; type=EST; length=837bp
CCCCGTTTTTTGGGTTNTTAAAGTATCCCCACCCGAANAATGGGGCTGAC
TTTCCCAAAGCTGTTCAGCCGGCTCTTTGCCAANAAAAAAATGCGAATTC
TAAGGTTGGTCTTGATGCTGCTGGTAAGACCNCTATCTTGTACAAGCTCA
AGCCTGNANAGATTGTCNCCNCAATTCCCTACCATTGGGTTTAATGTGNA
GACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGGTGGCC
AGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGT
CTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAG
GGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGANATGCAGTGT
TGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCT
GAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTA
CATCCANAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGG
ATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTAAGATCTT
TTTGCGGACTGGCGATTCTGGATGCAGGGGTGAATATTATCTATTTTTTT
TCTTTTTTAACCCTTTTTGTTTNANACGGTTGGGTTGTTGTGTTGTTTTG
GCCCTAGGATCTTTACAACTATATTGTACTANAANAATTGTTGGTTGGAT
ACATGTACTCCAAGGTTTTTGGCTCGGTTTAGATATCTGTAATTTAAACT
AATTTGGTGCNCCACTCATTTGAAATTGTTTTTTTCG
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