CX043423

Overview
NameCX043423
Unique NameCX043423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.912e-31
Identity = 65/76 (85.53%), Postives = 74/76 (97.37%), Query Frame = 2
Query:  320 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            TID LIETGNSEQIFQKAIQEQGRGQV++TL EIQERHDAV+++EKKLLDLQQI++DMAVLV+AQGE+LDNIESQV
Sbjct:  174 TIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQV 249          

HSP 2 Score: 24.2534 bits (51), Expect = 2.912e-31
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  634 VLMEMSVQVSNAVTNVQSGTTA 699
            +L  +  QVS+AV +VQSG TA
Sbjct:  241 MLDNIESQVSSAVDHVQSGNTA 262          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 58/75 (77.33%), Postives = 72/75 (96.00%), Query Frame = 2
Query:  323 IDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            ID LIETG+SEQIFQKAI+EQGRGQ+++TL EIQERHDAV+++EKKLLDLQQ+++DMAVLV+AQGE+LDNIE+ V
Sbjct:  176 IDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMV 250          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  320 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            TID+LI +G SE   QKAIQEQGRGQ+L+T+ EIQERHDAVKEIEK LL+L Q+++DMA LVEAQG+ L+NIES V
Sbjct:  168 TIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHV 243          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  320 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            TI++LI +G SE   QKAIQEQGRGQ+L+T+ EIQERHDAVKEIEK L++L Q+++DMA LVE+QG+ L++IES V
Sbjct:  173 TIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHV 248          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = 2
Query:  320 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            T++ LI +G SE+  QKAIQEQGRGQV++TL EIQERHD VKEIE+ LL+L Q+++DMA LVEAQG +L++IES V
Sbjct:  176 TVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNV 251          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  320 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            T+D LI TG SE+  QKAIQEQGRG+VL+T+ EIQERHDAVK+IEK L +L Q+++DMAVLVE QG  LD+IES V
Sbjct:  184 TLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHV 259          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  320 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            T++ LI TG SE   QKAIQEQGRG++L+T+ EIQERHDAVK+IEK L +L Q+++DMAVLVE QG  LD+IE  V
Sbjct:  183 TLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNV 258          
BLAST of CX043423 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  332 LIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 547
            + +    E+   +AIQE G+G+VL T+ EIQ+R+DA KEIEK LL+L Q+++DMAV+VE+QGE +D IE  V
Sbjct:  186 ITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHV 257          
The following BLAST results are available for this feature:
BLAST of CX043423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SY132_ARATH2.912e-3185.53Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH1.680e-2777.33Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY125_ARATH6.606e-2471.05Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY124_ARATH2.125e-2265.79Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY123_ARATH2.775e-2265.79Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY121_ARATH2.775e-2268.42Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH6.836e-2164.47Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY111_ARATH1.475e-1552.78Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11A02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A02-A3-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043423 ID=CX043423; Name=CX043423; organism=Citrus sinensis; type=EST; length=699bp
AGACTCTAAGACAAAGGATCCAAGAGGAGTATCGTGAGGTTGTGGAAAGA
CGAGTCATTACAGGTTTGGATAGTTGGCTTATAAGTTAGCAAAACTGAAA
AAGTTTATGAATCCAAAGTACAAAGAGATATTGGCCTTATGATATTAGCA
TTAAATGGGTGATGGAATATCTATTCATTGTTCTTGTTTCAAATTTTGTG
GTTGAACAGTTACTGGAACCAGACCAGATGAGGAGGTGAGCCTGAATCCT
GACATTATACTTTCAGCGTTAATGTTTATGGATGCGTCATAATTGGCAAA
AATTTCATGTCTGTTTTAGACAATTGACCACCTGATAGAAACTGGAAACA
GTGAGCAAATCTTCCAGAAGGCAATTCAAGAGCAGGGACGAGGACAGGTG
CTGAACACCTTAGAAGAAATCCAGGAGAGACACGATGCTGTCAAGGAAAT
TGAGAAGAAGCTTCTTGACTTGCAGCAGATTTACATGGATATGGCAGTTC
TAGTTGAGGCCCAAGGAGAAATTTTGGACAACATTGAAAGCCAGGTTTGC
TTTTGTACTCTCAACCTTTTTGGTTGGGTTGTGTTTCTGTGTGCGCACAT
GTTTGTTGAAGGACATATTTTGTTTGGTTGTGTGTGTTAATGGAAATGTC
GGTTCAGGTTTCAAATGCAGTCACTAACGTCCAGTCAGGGACAACTGCT
back to top