CX043422

Overview
NameCX043422
Unique NameCX043422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.143e-40
Identity = 65/76 (85.53%), Postives = 74/76 (97.37%), Query Frame = -1
Query:  511 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 738
            TID LIETGNSEQIFQKAIQEQGRGQV++TL EIQERHDAV+++EKKLLDLQQI++DMAVLV+AQGE+LDNIESQV
Sbjct:  174 TIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQV 249          

HSP 2 Score: 53.1434 bits (126), Expect = 7.143e-40
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = -3
Query:  242 VLMEMSVQVSNAVTNVQSGTTALQSAKKHQKSSRKWMCXXXXXXXXXXXXXXXXXIKPWKS 424
            +L  +  QVS+AV +VQSG TALQ AK  QK+SRKWMC                 +KPWK+
Sbjct:  241 MLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKWMCIAIIILLIVVAVIVVGVLKPWKN 301          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.052e-34
Identity = 58/75 (77.33%), Postives = 72/75 (96.00%), Query Frame = -1
Query:  511 IDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 735
            ID LIETG+SEQIFQKAI+EQGRGQ+++TL EIQERHDAV+++EKKLLDLQQ+++DMAVLV+AQGE+LDNIE+ V
Sbjct:  176 IDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMV 250          

HSP 2 Score: 45.0542 bits (105), Expect = 1.052e-34
Identity = 24/55 (43.64%), Postives = 27/55 (49.09%), Query Frame = -3
Query:  236 VSNAVTNVQSGTTALQSAKKHQKSSRKWMCXXXXXXXXXXXXXXXXXIKPWKSGN 400
            VS+AV +VQSG   L  A K QKSSRKWMC                 +KPW   N
Sbjct:  250 VSSAVDHVQSGNNQLTKAVKSQKSSRKWMCIAILILLIIIIITVISVLKPWTQKN 304          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.694e-29
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  511 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 738
            TID+LI +G SE   QKAIQEQGRGQ+L+T+ EIQERHDAVKEIEK LL+L Q+++DMA LVEAQG+ L+NIES V
Sbjct:  168 TIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHV 243          

HSP 2 Score: 36.965 bits (84), Expect = 9.694e-29
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = -3
Query:  311 LMEMSVQVSNAVTNVQSGTTALQSAKKHQKSSRKWMC 421
            L  +   V+ A + V+ GT  LQ A+++QKSSRKW C
Sbjct:  236 LNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTC 272          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.997e-28
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  511 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 738
            TI++LI +G SE   QKAIQEQGRGQ+L+T+ EIQERHDAVKEIEK L++L Q+++DMA LVE+QG+ L++IES V
Sbjct:  173 TIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHV 248          

HSP 2 Score: 38.891 bits (89), Expect = 7.997e-28
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = -3
Query:  311 LMEMSVQVSNAVTNVQSGTTALQSAKKHQKSSRKWMC 421
            L ++   VS A + V+ GT  LQ A+++QKSSRKW C
Sbjct:  241 LNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTC 277          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.054e-27
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = -1
Query:  511 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 738
            T+D LI TG SE+  QKAIQEQGRG+VL+T+ EIQERHDAVK+IEK L +L Q+++DMAVLVE QG  LD+IES V
Sbjct:  184 TLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHV 259          

HSP 2 Score: 36.5798 bits (83), Expect = 5.054e-27
Identity = 17/62 (27.42%), Postives = 30/62 (48.39%), Query Frame = -3
Query:  236 LMEMSVQVSNAVTNVQSGTTALQSAKKHQKSSRKWMCXXXXXXXXXXXXXXXXXIKPWKSGN 421
            L ++   V  A + ++ GT  LQ+A+ +QK++RKW C                 +KPW + +
Sbjct:  252 LDDIESHVGRASSFIRGGTDQLQTARVYQKNTRKWTCIAIIILIIIITVVVLAVLKPWNNSS 313          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.846e-25
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1
Query:  511 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 738
            T++ LI TG SE   QKAIQEQGRG++L+T+ EIQERHDAVK+IEK L +L Q+++DMAVLVE QG  LD+IE  V
Sbjct:  183 TLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNV 258          

HSP 2 Score: 33.4982 bits (75), Expect = 9.846e-25
Identity = 18/60 (30.00%), Postives = 28/60 (46.67%), Query Frame = -3
Query:  242 LMEMSVQVSNAVTNVQSGTTALQSAKKHQKSSRKWMCXXXXXXXXXXXXXXXXXIKPWKS 421
            L ++   V  A + V+SG   L  A+ +QK++RKW C                 +KPW+S
Sbjct:  251 LDDIEGNVKRANSLVRSGADRLVKARFYQKNTRKWTCFAILLLLIIVVLIVVFTVKPWES 310          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.228e-22
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = -1
Query:  511 TIDHLIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 738
            T++ LI +G SE+  QKAIQEQGRGQV++TL EIQERHD VKEIE+ LL+L Q+++DMA LVEAQG +L++IES V
Sbjct:  176 TVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNV 251          
BLAST of CX043422 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.607e-21
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = -1
Query:  511 LIETGNSEQIFQKAIQEQGRGQVLNTLEEIQERHDAVKEIEKKLLDLQQIYMDMAVLVEAQGEILDNIESQV 726
            + +    E+   +AIQE G+G+VL T+ EIQ+R+DA KEIEK LL+L Q+++DMAV+VE+QGE +D IE  V
Sbjct:  186 ITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHV 257          

HSP 2 Score: 38.1206 bits (87), Expect = 7.607e-21
Identity = 17/35 (48.57%), Postives = 22/35 (62.86%), Query Frame = -3
Query:  311 EMSVQVSNAVTNVQSGTTALQSAKKHQKSSRKWMC 415
            E+   V NA   V  G   L++AK HQ++SRKWMC
Sbjct:  252 EIEHHVINASHYVADGANELKTAKSHQRNSRKWMC 286          
The following BLAST results are available for this feature:
BLAST of CX043422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SY132_ARATH7.143e-4085.53Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH1.052e-3477.33Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY125_ARATH9.694e-2971.05Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY124_ARATH7.997e-2865.79Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY121_ARATH5.054e-2768.42Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH9.846e-2564.47Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY123_ARATH3.228e-2265.79Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY111_ARATH7.607e-2152.78Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11A02-A3-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043422 ID=CX043422; Name=CX043422; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTTTTTTTTCAGAAAATCAAATTAAAATGCCCTAAGAAGAAA
TTTTCATTAGAGGGCAACTGAGCATACGTGTCTCAAAATCCTTAATCACA
CAACCATCCACAAACCAAATTTCACCCCAAAATAGAAAAATGAGAGAGAA
AAATGAAGAGAACCCACACTAAAGAAGTGAAAATATACTTAAAAGACACA
GTCATAGACATTTTGACTAAAGGGAAGACTCAAGAATTGCCACTCTTCCA
AGGTTTGATGACACCAACTACTATGACAGCTACTATAATCAAGAGTATTA
TAATGGCAATGCACATCCATTTTCGGGAACTCTTCTGGTGTTTCTTAGCA
CTTTGTAGAGCAGTTGTCCCTGACTGGACGTTAGTGACTGCATTTGAAAC
CTGAACCGACATTTCCATTAACACACACAACCAAACAAAATATGTCCTTC
AACAAACATGTGCGCACACAGAAACACAACCCAACCAAAAAGGTTGAGAG
TACAAAAGCAAACCTGGCTTTCAATGTTGTCCAAAATTTCTCCTTGGGCC
TCAACTAGAACTGCCATATCCATGTAAATCTGCTGCAAGTCAAGAAGCTT
CTTCTCAATTTCCTTGACAGCATCGTGTCTCTCCTGGATTTCTTCTAAGG
TGTTCAGCACCTGTCCTCGTCCCTGCTCTTGAATTGCCTTCTGGAAGATT
TGCTCACTGTTTCCAGTTTCTATCAGGTGGTCAATTGTCTAAAACAGACA
TGAAATTTT
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