DC900206
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: SF3B3_PONAB (Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41 Identity = 72/125 (57.60%), Postives = 101/125 (80.80%), Query Frame = 3 Query: 6 EEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ KKLE+IR + Sbjct: 1090 EVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVTKKLEDIRTR 1214
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: SF3B3_MOUSE (Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.810e-41 Identity = 72/125 (57.60%), Postives = 101/125 (80.80%), Query Frame = 3 Query: 6 EEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ KKLE+IR + Sbjct: 1090 EVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 1214
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: SF3B3_HUMAN (Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4) HSP 1 Score: 168.703 bits (426), Expect = 1.810e-41 Identity = 72/125 (57.60%), Postives = 101/125 (80.80%), Query Frame = 3 Query: 6 EEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ KKLE+IR + Sbjct: 1090 EVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 1214
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: SF3B3_BOVIN (Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.810e-41 Identity = 72/125 (57.60%), Postives = 101/125 (80.80%), Query Frame = 3 Query: 6 EEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 E I+ +HVG+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF H+EMH+R EHPPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ KKLE+IR + Sbjct: 1090 EVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 1214
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: SF3B3_DANRE (Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.877e-41 Identity = 72/125 (57.60%), Postives = 99/125 (79.20%), Query Frame = 3 Query: 6 EEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 E I+ +H+G+ V SLQK +L+PGG ES++Y T+ G +G ++ F+S +D DFF HLEMHMR E PPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ Q+ +++ELDRTP E+ KKLE+IR + Sbjct: 1090 EIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRTPPEVSKKLEDIRTR 1214
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: SF3B3_DICDI (Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 9.930e-40 Identity = 75/126 (59.52%), Postives = 100/126 (79.37%), Query Frame = 3 Query: 3 MEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 ++ I F VGD VT+L K SLV GG E ++Y T+ G++GA++ F+SR+DVDFFS LEM+MR + PLCGRDH+AYRS YFPVK++IDGDLCEQF TL+ Q I++EL R+P E++KKLEEIR++ Sbjct: 1128 LDHIANFFVGDTVTTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHLAYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEIRSQ 1253
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: RSE1_USTMA (Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis GN=RSE1 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31 Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = 3 Query: 12 IVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 374 + F VGD++TSL + ++V GG E ++Y + GS+GA++ F S++DVD S LE H+RQE+ + GRDH+AYRS+Y PVK VIDGDLCE F LS Q IA ELDR PGEI KKL ++R Sbjct: 1095 VAHFFVGDIITSLHRTAMVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQENNSIVGRDHLAYRSSYAPVKSVIDGDLCETFGLLSPAKQNAIAGELDRKPGEINKKLAQLR 1215
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: RSE1_CRYNE (Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans GN=RSE1 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30 Identity = 62/123 (50.41%), Postives = 87/123 (70.73%), Query Frame = 3 Query: 6 EEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIR 374 E I +++G VVTS+ K LV GG + ++Y T+ G++GA++ F S DD++F S LEMHMR + L GRDH+AYR Y P+K V+DGDLCE F L Q+ IA +LDR+ G++LKKLE++R Sbjct: 1090 EMIGHYNIGSVVTSITKIPLVAGGRDVLVYTTISGAVGALVPFVSSDDIEFMSTLEMHMRTQDISLVGRDHIAYRGYYVPIKGVVDGDLCESFSLLPYPKQQAIALDLDRSVGDVLKKLEQMR 1212
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: RSE1_NEUCR (Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa GN=rse-1 PE=3 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 4.623e-29 Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 3 Query: 15 VQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 V F+ D+ TS+ K SLV GG + +++ + G++G + F SR+DVDFF +LE HMR E PPL GRDH+ YR Y PVK VIDGDLCE+F L D ++ IA ELDR+ EI +K+ +IR + Sbjct: 1085 VHFYTQDLPTSICKTSLVVGGQDVLLWSGLQGTVGVFIPFVSREDVDFFQNLENHMRAEDPPLAGRDHLIYRGYYTPVKGVIDGDLCERFSLLPNDKKQMIAGELDRSVREIERKISDIRTR 1206
BLAST of DC900206 vs. ExPASy Swiss-Prot
Match: RSE1_MAGGR (Pre-mRNA-splicing factor RSE1 OS=Magnaporthe grisea GN=RSE1 PE=3 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 2.997e-28 Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 3 Query: 33 DVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGEILKKLEEIRNK 380 D+ TS+ K +LV GG E +++G G++G ++ F SR+D DFF LE H+R E PPL GRDH+ YR Y PVK VIDGDLCE++ L D ++ IA ELDR+ EI +K+ +IR + Sbjct: 1098 DIPTSICKTNLVVGGQEVLLWGGFQGTIGVLIPFVSREDADFFQSLEQHLRSEDPPLAGRDHLMYRGCYVPVKGVIDGDLCERYTMLPNDKKQMIAGELDRSVREIERKISDIRTR 1213 The following BLAST results are available for this feature:
BLAST of DC900206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC900206 ID=DC900206; Name=DC900206; organism=Citrus sinensis; type=EST; length=577bpback to top |