CX043383

Overview
NameCX043383
Unique NameCX043383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:33..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 2.777e-57
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.092e-53
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTS
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 7.094e-45
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG +
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAA 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.210e-44
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G +
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAA 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 4.598e-44
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.598e-44
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG +
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.006e-44
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 6.006e-44
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGD+K KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.747e-43
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 336
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQKGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
BLAST of CX043383 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 2.282e-43
Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 1
Query:   34 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 342
            MVNVPKT+KTYCK K+C+KHT HKVTQYK GK SL +QGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG +
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAA 103          
The following BLAST results are available for this feature:
BLAST of CX043383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_GOSHI2.777e-57100.0060S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH1.092e-5393.2060S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH7.094e-4578.6460S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE1.210e-4478.6460S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_COPCI4.598e-4476.7060S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC74.598e-4476.7060S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_PICJA6.006e-4481.1960S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICCI6.006e-4481.1960S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_DEBHA1.747e-4380.2060S ribosomal protein L44 OS=Debaryomyces hansenii... [more]
RL44_CANGY2.282e-4377.6760S ribosomal protein L44 OS=Candida glycerinogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10F11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10F11-L22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043383 ID=CX043383; Name=CX043383; organism=Citrus sinensis; type=EST; length=547bp
GCTCTCACCTCCTCGTCGCCGCCGCCGGCCATCATGGTGAACGTTCCCAA
GACTAAGAAGACCTACTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGC
ACAAGGTGACACAGTACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGG
AAGAGACGGTATGATCGTAAACAGTCTGGCTATGGTGGTCAGACCAAGCC
TGTCTTCCACAAGAAGGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCC
AATGCCAGGGTTGCAAGCATGTGTCTCAACATCCCATCAAGAGGTGCAAG
CACTTTGAAATTGGTGGAGACAAGAAGGGAAAGGGAACATCTCTTTTCTA
AATGCCTTTATTTTTGTTTGTATGCTTTTTACTTTGCTGCACTTGATGGA
ACTTTACCCAGTATGAGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGA
TGCTGTTAATTTAAAACTTGAAGCGGTTGTTTGTTAAGTGCTTATTTTAT
CAGTTAATTTTAGAATTGGATTTTTTGACCNAAAAAAAAAAAAAAAA
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