CX043311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2) HSP 1 Score: 390.578 bits (1002), Expect = 4.916e-108 Identity = 189/252 (75.00%), Postives = 220/252 (87.30%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDS--SLLAPGTYYLTEVDSM 752 FYKPNLASEYPVVDGKLSQTCYLMALD+CYK LC+K+EK+EGK+FS+++ADY VFHSPYNKLVQKSFARLL+NDF+RNASS+DEA KEK P+S+L+ DESYQSRDLEKVSQQ+AKP YDAKVQP+TLIPK+VGNMYT IH KH++L GKRVV+FSYGSG TATMFSL+L++ + PFS+SNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAKDFVT+K+ LLAPGTYYL EVDS+ Sbjct: 192 FYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDADYIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEKVSQQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSL 443
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 8.819e-49 Identity = 101/249 (40.56%), Postives = 149/249 (59.84%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDS 749 FYKP++ SEYP VDGKLS +CY A+D CY +EK GK FSL D+ +FHSPYNKLVQKSF R+L+NDF+ N + A+ E + + +++Y LEK + K Y KV P+TL+ KQ+GN Y + K ++L GKRV+ FSYGSGL A+ FS K+ + +++I+ +++ +L R PE F E + L E R+ K++V S +++ + PG++YL+ VD+ Sbjct: 194 FYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEKKYGKSFSLDQVDFALFHSPYNKLVQKSFGRMLYNDFLNNPNDSRYASLE---AYKNVKPEDTYFDSVLEKALSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLAASAFSFKVEK-----PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPSDETTNMFPGSFYLSSVDN 434
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 8.819e-49 Identity = 108/254 (42.52%), Postives = 154/254 (60.63%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATK-EKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKHS-ELDGKRVVLFSYGSGLTATMFSLKL-SEGRHPFSLSNILS-VMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752 FYKP+L+S YP VDGKLS CYL ALD CY+ CSK +K G++F + D +FH+PY KLVQKS ARL+ NDF+R AS + TK L + +++Y R++EK +K +++ K +PS L+ QVGNMYT + +K + EL GKRV LFSYGSGL ++MFSL++ S+ SL ++S + ++ +L RH+ PE F + M+ EH + + +L PGT+YL VDS+ Sbjct: 191 FYKPDLSSLYPTVDGKLSIQCYLSALDHCYQLYCSKIQKQLGEKFDIERLDAVLFHAPYCKLVQKSLARLVLNDFVR-ASEEERTTKYSSLEALKGVKLEDTYFDREVEKAVMTYSKNMFEEKTKPSLLLANQVGNMYTPSLYGGLVSLLVSKSAQELAGKRVALFSYGSGLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREHNHHKAPYTPEGSIDVLFPGTWYLESVDSL 443
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.936e-44 Identity = 101/258 (39.15%), Postives = 143/258 (55.43%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752 FYKPNLASEYP+VDGKLS CYL ALD CY K + + F+L + Y +FH+P+ K+VQKS ARL+FNDF+ ++S + L F L +E+Y ++D++K + + +++ K + S + GNMYT + H+ EL G R+ FSYGSGL A+ FS ++S+ P S + SV ++ +L SR PE F E+M E Y +F D+S L PGT+YL VD M Sbjct: 241 FYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRRKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFKGLKLEETYTNKDVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEM 498
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.936e-44 Identity = 101/258 (39.15%), Postives = 143/258 (55.43%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752 FYKPNLASEYP+VDGKLS CYL ALD CY K + + F+L + Y +FH+P+ K+VQKS ARL+FNDF+ ++S + L F L +E+Y ++D++K + + +++ K + S + GNMYT + H+ EL G R+ FSYGSGL A+ FS ++S+ P S + SV ++ +L SR PE F E+M E Y +F D+S L PGT+YL VD M Sbjct: 241 FYKPNLASEYPLVDGKLSIQCYLRALDRCYAAYRKKIQNQWKQAGNNQPFTLDDVQYMIFHTPFCKMVQKSLARLMFNDFLSSSSDKQNNLYKGLEAFRGLKLEETYTNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEM 498
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS2_BLAGE (Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella germanica GN=HMGCS-2 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.834e-44 Identity = 102/259 (39.38%), Postives = 144/259 (55.60%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL------EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHNKH-SELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752 FYKP+L SEYPVVDGKLS CYL ALD CY CSK EK E + L D FVFHSPY KLVQKS ARL+ NDF++ + L L +++Y RD+EK+ +K L++ K +PS ++ QVGNMYT + ++ EL GK + +FSYGSG A+MFSL +S P S + + ++ ++ +++ R + P F +M++ E + + + L PGT+YL +DSM Sbjct: 194 FYKPDLMSEYPVVDGKLSVQCYLSALDHCYPRFCSKTEKYLKRCGKENTKIDLDYFDAFVFHSPYCKLVQKSVARLVLNDFIQYPEKYQD-----LQQLRNLKFEDTYFDRDIEKIFMDKSKQLFEKKTKPSLMLANQVGNMYTTSLYGGLVSLLISEDIGELAGKCICMFSYGSGFAASMFSLHISTDSSPGSTLSRLVTNLTHIKPQVQQRVKLSPGEFENIMEIREQNHHKAPYTPVASPNTLFPGTWYLESIDSM 447
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.457e-43 Identity = 99/256 (38.67%), Postives = 143/256 (55.86%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKL-----EGKQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746 FYKPNLASEYP+VDGKLS CYL ALD CY K + + F+L + Y +FH+P+ K+VQKS ARL+FNDF+ +S + + L F L +++Y ++DL+K + ++ ++D K + S + GNMYT + H+ EL G R+ FSYGSGL A+ FS ++S+ P S + + S ++ +L SR PE F E+M E Y +F D++ L PGT+YL VD Sbjct: 241 FYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPFTLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASSDTQTSLYKGLEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVD 496
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.748e-42 Identity = 99/256 (38.67%), Postives = 144/256 (56.25%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746 FYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD+EK + + L+ K + S L+ Q GNMYT + +L GKR+ +FSYGSGL AT++SLK+++ P S + + S+ ++ +L SR P+ F E MKL E + +++ L GT+YL VD Sbjct: 204 FYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIRAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVD 459
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 2.748e-42 Identity = 99/256 (38.67%), Postives = 144/256 (56.25%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYE---KLEG--KQFSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVD 746 FYKP++ SEYP+VDGKLS CYL ALD CY C K + EG K F+L++ + +FHSPY KLVQKS AR+L NDF+ + + + L F + +++Y RD+EK + + L+ K + S L+ Q GNMYT + +L GKR+ +FSYGSGL AT++SLK+++ P S + + S+ ++ +L SR P+ F E MKL E + +++ L GT+YL VD Sbjct: 204 FYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVD 459
BLAST of CX043311 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.687e-42 Identity = 100/259 (38.61%), Postives = 142/259 (54.83%), Query Frame = 3 Query: 3 FYKPNLASEYPVVDGKLSQTCYLMALDTCYKCLCSKYEKLEGKQ------FSLSNADYFVFHSPYNKLVQKSFARLLFNDFMRNASSVDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXXIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSM 752 FYKPN SEYP+VDGKLS CYL ALD CY K EK + KQ F+L + + +FH+P+ KLVQKS ARL+F+DF+ S + + L F +++Y ++D+EK Q+ + L++ K +PS + GNMYT + +L G R+ FSYGSGL A+ +SL++S+ P S + SV ++ +L SR PE F E+M E Y +F D + L PGT+YL VD + Sbjct: 241 FYKPNATSEYPLVDGKLSIQCYLRALDRCYTLYRQKIEK-QWKQAGIERHFTLDDLQFMIFHTPFCKLVQKSLARLMFSDFLLADSDTQSSLYKGLEAFRGQKLEDTYANKDIEKAFQKASLDLFNKKTKPSLYLSLHNGNMYTSSLYGCLASLLSQCSAQDLAGSRIGAFSYGSGLAASFYSLRVSQDASPGSPLEKLVSSVSDLPERLASRKRVSPEEFTEIMNQREQYYHKVNFTPPGDPNSLFPGTWYLERVDEL 498 The following BLAST results are available for this feature:
BLAST of CX043311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043311 ID=CX043311; Name=CX043311; organism=Citrus sinensis; type=EST; length=753bpback to top |