CX043310

Overview
NameCX043310
Unique NameCX043310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9697 contig Csv1_Contig9697:1016..1829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 1.223e-70
Identity = 135/195 (69.23%), Postives = 158/195 (81.03%), Query Frame = -1
Query:  236 VDEATKEKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDS--SLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 814
            +DEA KEK  P+S+L+ DESYQSRDLEKVSQQ+AKP YDAKVQP+TLIPK+VGNMYT         LIH KH++L GKRVV+FSYGSG TATMFSL+L++ + PFS+SNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAKDFVT+K+    LLAPGTYYL EVDS+YRRFY KK       E+GS+ANGH
Sbjct:  273 IDEAAKEKFTPYSSLTLDESYQSRDLEKVSQQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKG------EDGSVANGH 461          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.014e-24
Identity = 67/183 (36.61%), Postives = 102/183 (55.74%), Query Frame = -1
Query:  281 DEATKEKLGPFSTLSG---DESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLIHNKHS-ELDGKRVVLFSYGSGLTATMFSLKLS-EGRHPFSLSNILS-VMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 811
            +E    K      L G   +++Y  R++EK     +K +++ K +PS L+  QVGNMYT         L+ +K + EL GKRV LFSYGSGL ++MFSL++S +     SL  ++S + ++  +L  RH+  PE F + M+  EH +    +       +L PGT+YL  VDS+YRR Y + P
Sbjct:  270 EEERTTKYSSLEALKGVKLEDTYFDREVEKAVMTYSKNMFEEKTKPSLLLANQVGNMYTPSLYGGLVSLLVSKSAQELAGKRVALFSYGSGLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREHNHHKAPYTPEGSIDVLFPGTWYLESVDSLYRRSYKQVP 452          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.050e-21
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 790
            L  F  L  +E+Y ++D++K   + +  +++ K + S  +    GNMYT         L+ H+   EL G R+  FSYGSGL A+ FS ++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D+S L PGT+YL  VD M+RR YA++P
Sbjct:  335 LEAFKGLKLEETYTNKDVDKALLKASLDMFNKKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARRP 507          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.210e-21
Identity = 63/173 (36.42%), Postives = 92/173 (53.18%), Query Frame = -1
Query:  281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 790
            L  F  L  +E+Y ++D++K   + +  +++ K + S  +    GNMYT         L+ H+   EL G R+  FSYGSGL A+ FS ++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D+S L PGT+YL  VD M+RR YA+ P
Sbjct:  335 LEAFRGLKLEETYTNKDVDKALLKASLDMFNQKTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARCP 507          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.887e-21
Identity = 61/173 (35.26%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 790
            L  F  L  +++Y ++DL+K   + ++ ++D K + S  +    GNMYT         L+ H+   EL G R+  FSYGSGL A+ FS ++S+   P S  + L  S  ++  +L SR    PE F E+M   E  Y   +F    D++ L PGT+YL  VD  +RR YA++P
Sbjct:  335 LEAFGGLKLEDTYTNKDLDKALLKASQDMFDKKTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 507          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 59/162 (36.42%), Postives = 88/162 (54.32%), Query Frame = -1
Query:  287 DESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAK 763
            +++Y ++D+EK  Q+ +  L++ K +PS  +    GNMYT         L+      +L G R+  FSYGSGL A+ +SL++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +YRR YA+
Sbjct:  344 EDTYANKDIEKAFQKASLDLFNKKTKPSLYLSLHNGNMYTSSLYGCLASLLSQCSAQDLAGSRIGAFSYGSGLAASFYSLRVSQDASPGSPLEKLVSSVSDLPERLASRKRVSPEEFTEIMNQREQYYHKVNFTPPGDPNSLFPGTWYLERVDELYRRKYAR 505          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS2_BLAGE (Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella germanica GN=HMGCS-2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 55/173 (31.79%), Postives = 94/173 (54.34%), Query Frame = -1
Query:  287 EKLGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLIHNKH-SELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSN--ILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAK 796
            + L     L  +++Y  RD+EK+    +K L++ K +PS ++  QVGNMYT         L+ ++   EL GK + +FSYGSG  A+MFSL +S    P S  +  + ++ ++  +++ R +  P  F  +M++ E  +    +      + L PGT+YL  +DSM+RR Y +
Sbjct:  282 QDLQQLRNLKFEDTYFDRDIEKIFMDKSKQLFEKKTKPSLMLANQVGNMYTTSLYGGLVSLLISEDIGELAGKCICMFSYGSGFAASMFSLHISTDSSPGSTLSRLVTNLTHIKPQVQQRVKLSPGEFENIMEIREQNHHKAPYTPVASPNTLFPGTWYLESIDSMHRRKYKR 454          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.410e-20
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 790
            L  F  L  +++Y ++D++K   + +  +++ K + S  +    GNMYT         L+ H+   +L G R+  FSYGSGL A+ FS ++S+   P S    L  S  ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +YRR YA++P
Sbjct:  335 LEAFRGLKLEDTYTNKDVDKAFLKASLNMFNKKTKNSLYLSTYNGNMYTSSLYGCLASLLAHHSAQDLAGSRIGAFSYGSGLAASFFSFRVSQDASPGSPLEKLVSSTSDLQKRLASRKRVSPEEFTEIMNQREQYYHKMNFSPPGDKNSLFPGTWYLERVDELYRRKYARRP 507          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 56/166 (33.73%), Postives = 92/166 (55.42%), Query Frame = -1
Query:  293 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFY 790
            L  +  +  +++Y    LEK    + K  Y  KV P+TL+ KQ+GN Y          L+  K ++L GKRV+ FSYGSGL A+ FS K+ +      +++I+  +++  +L  R    PE F E + L E R+  K++V S +++ + PG++YL+ VD+   R Y
Sbjct:  280 LEAYKNVKPEDTYFDSVLEKALSAITKNDYATKVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLAASAFSFKVEK-----PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPSDETTNMFPGSFYLSSVDNAGIRKY 440          
BLAST of CX043310 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.523e-20
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = -1
Query:  281 LGPFSTLSGDESYQSRDLEKVSQQLAKPLYDAKVQPSTLIPKQVGNMYTXXXXXXXXXLIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 790
            L  F  +  +++Y  RD+EK   + +  L+  K + S L+  Q GNMYT         ++      +L GKR+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD  +RR YA++P
Sbjct:  298 LEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470          
The following BLAST results are available for this feature:
BLAST of CX043310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
HMCS_ARATH1.223e-7069.23Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCS1_BLAGE1.014e-2436.61Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCS2_RAT1.050e-2136.42Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_MOUSE5.210e-2136.42Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_HUMAN8.887e-2135.26Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_PIG1.161e-2036.42Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_BLAGE2.586e-2031.79Hydroxymethylglutaryl-CoA synthase 2 OS=Blattella ... [more]
HMCS2_BOVIN4.410e-2034.10Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCSA_DICDI5.760e-2033.73Hydroxymethylglutaryl-CoA synthase A OS=Dictyostel... [more]
HMCS1_PONAB7.523e-2033.53Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10C01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C01-F2-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043310 ID=CX043310; Name=CX043310; organism=Citrus sinensis; type=EST; length=814bp
TTTTTTTTTTTTTTTTGCTAAATCAAGGCATTTCGGAAACTTTTATTACA
AAGAAAACAATTCACCGCTGATCGCATGCCTGCAGATGAACAACTACTAT
TTGCTTTTGCATCACAAACTCAAGGAAGCACGGATATTTTTTAAGTACTG
GCAACACCAATCTGCTTAATTAAAAACAACATTGAACAAGATGAATCAAA
TTCGGGCGATACAAATAATAATTTGATCACCCTTAGTGACCATTTGCAAG
TGACCCATTCTCGCAGTTGGTAACATCTGCAGGCTTCTTGGCATAAAATC
TCCGGTACATGGAGTCAACTTCAGTGAGATAGTATGTTCCTGGAGCCAAA
AGGCTACTGTCTTTGCTTGTTACAAAGTCTTTGGCTCCATATCTATGCTC
CATTAGCTTCATGACTTCCACAAAATTCTCTGGGGGAAACTCATGCCTTG
ATTTCAACTTCCCTGCAACATTCATAACAGATAGGATGTTTGACAAGCTG
AAGGGATGACGACCTTCACTGAGTTTCAATGAGAACATCGTTGCAGTCAA
ACCACTTCCATACGAGAACAAAACCACTCGCTTGCCATCCAATTCACTGT
GTTTGTTGTGAATAAGGGAAGCCAATGCTGCATACAGAGATGCTGTGTAC
ATGTTACCAACTTGCTTCGGTATTAAAGTGGATGGTTGGACCTTTGCGTC
ATAAAGGGGCTTTGCAAGTTGTTGGGAAACCTTCTCAAGATCCCGGCTTT
GGTAGCTTTCATCACCAGACAAGGTTGAAAATGGTCCCAGCTTTTCTTTG
GTAGCCTCGTCGAC
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